{ "type": "genome", "identifier": "GCF_002266845.1", "organism": "Micromonospora echinospora", "title": "Micromonospora echinospora", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangxi Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002266845.1", "bioproject": "PRJNA224116", "biosample": "SAMN06947364", "wgs_master": "NGNT00000000.1", "refseq_category": "na", "taxid": "1877", "species_taxid": "1877", "organism_name": "Micromonospora echinospora", "infraspecific_name": "strain=ATCC 15837", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/23", "asm_name": "ASM226684v1", "asm_submitter": "Jiangxi Normal University", "gbrs_paired_asm": "GCA_002266845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/266/845/GCF_002266845.1_ASM226684v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7700368", "genome_size_ungapped": "7698508", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "77", "contig_count": "77", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002266845.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "6648", "protein_coding_gene_count": "6417", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-23", "dateModified": "2017-08-23", "datePublished": "2017-08-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora echinospora" ], "sample_taxid": [ "1877" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Netherlands" ], "sample_host_location_id": [], "data_size": "2.043 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7700368", "Number of Sequences": "77", "Longest Sequences (bp)": "637963", "N50 (bp)": "258174", "Gap Ratio (%)": "0.024155", "GCcontent (%)": "72.4", "Number of CDSs": "6607", "Average Protein Length": "343.1", "Coding Ratio (%)": "88.3", "Number of rRNAs": "3", "Number of tRNAs": "96", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora echinospora", "strain": "strain=ATCC 15837", "accession": "GCA_002266845.1", "taxid": 1877, "species_taxid": 1877, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2522, "total_fragments": 2530, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Micromonospora echinospora", "strain": "strain=DSM 43816", "accession": "GCA_900091495.1", "taxid": 1877, "species_taxid": 1877, "relation_to_type": "type", "validated": true, "ani": 99.991, "matched_fragments": 2527, "total_fragments": 2530, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Micromonospora sagamiensis", "strain": "strain=JCM 3310", "accession": "GCA_014680085.1", "taxid": 47875, "species_taxid": 47875, "relation_to_type": "type", "validated": true, "ani": 91.8616, "matched_fragments": 1918, "total_fragments": 2530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sagamiensis", "strain": "strain=DSM 43912", "accession": "GCA_007829995.1", "taxid": 47875, "species_taxid": 47875, "relation_to_type": "type", "validated": true, "ani": 91.8442, "matched_fragments": 1915, "total_fragments": 2530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 84.4181, "matched_fragments": 1060, "total_fragments": 2530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inositola", "strain": "strain=DSM 43819", "accession": "GCA_900090285.1", "taxid": 47865, "species_taxid": 47865, "relation_to_type": "type", "validated": true, "ani": 84.3949, "matched_fragments": 1270, "total_fragments": 2530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora citrea", "strain": "strain=DSM 43903", "accession": "GCA_900090315.1", "taxid": 47855, "species_taxid": 47855, "relation_to_type": "type", "validated": true, "ani": 84.1789, "matched_fragments": 1449, "total_fragments": 2530, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=aurantiaca", "accession": "GCA_013389765.1", "taxid": 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"coccus_cell_shape": 0.4, "filament_cell_shape": 0.4, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Micromonospora", "echinospora" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }