{ "type": "genome", "identifier": "GCF_002266855.1", "organism": "Winogradskyella aurantia", "title": "Winogradskyella aurantia", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002266855.1", "bioproject": "PRJNA224116", "biosample": "SAMN06947015", "wgs_master": "NGJN00000000.1", "refseq_category": "reference genome", "taxid": "1915063", "species_taxid": "1915063", "organism_name": "Winogradskyella aurantia", "infraspecific_name": "strain=WNB302", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/23", "asm_name": "ASM226685v1", "asm_submitter": "Shandong University at Weihai", "gbrs_paired_asm": "GCA_002266855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/266/855/GCF_002266855.1_ASM226685v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3203946", "genome_size_ungapped": "3203946", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002266855.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "2917", "protein_coding_gene_count": "2866", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-23", "dateModified": "2017-08-23", "datePublished": "2017-08-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella aurantia" ], "sample_taxid": [ "1915063" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Weihai, Shandong Province" ], "sample_host_location_id": [], "data_size": "0.908 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3203946", "Number of Sequences": "20", "Longest Sequences (bp)": "733988", "N50 (bp)": "487698", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.0", "Number of CDSs": "2852", "Average Protein Length": "336.4", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella aurantia", "strain": "strain=WNB302", "accession": "GCA_002266855.1", "taxid": 1915063, "species_taxid": 1915063, "relation_to_type": "type", "validated": true, "ani": 99.9999, 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1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella tangerina", "strain": "strain=M1309", "accession": "GCA_003260205.1", "taxid": 2023240, "species_taxid": 2023240, "relation_to_type": "type", "validated": true, "ani": 77.5739, "matched_fragments": 215, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 77.5403, "matched_fragments": 235, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella haliclonae", "strain": "strain=CCM 8681", "accession": "GCA_014635865.1", "taxid": 2048558, "species_taxid": 2048558, "relation_to_type": "type", "validated": true, "ani": 77.5169, "matched_fragments": 195, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ouciana", "strain": "strain=ZXX205", "accession": "GCA_009709615.1", "taxid": 2608631, "species_taxid": 2608631, "relation_to_type": "type", "validated": true, "ani": 77.507, "matched_fragments": 271, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella epiphytica", "strain": "strain=CECT 7945", "accession": "GCA_003217215.1", "taxid": 262005, "species_taxid": 262005, "relation_to_type": "type", "validated": true, "ani": 77.4791, "matched_fragments": 200, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.437, "matched_fragments": 132, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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12220", "accession": "GCA_014651315.1", "taxid": 262005, "species_taxid": 262005, "relation_to_type": "type", "validated": true, "ani": 77.3591, "matched_fragments": 199, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 77.3525, "matched_fragments": 211, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 77.278, "matched_fragments": 111, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella wandonensis", "strain": "strain=CECT 8445", "accession": "GCA_004346845.1", "taxid": 1442586, "species_taxid": 1442586, "relation_to_type": "type", "validated": true, "ani": 77.2129, "matched_fragments": 186, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 77.143, "matched_fragments": 118, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 77.1406, "matched_fragments": 230, "total_fragments": 1057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=SW033", "accession": "GCA_004310335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Winogradskyella", "aurantia" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }