{ "type": "genome", "identifier": "GCF_002269345.1", "organism": "Tsuneonella mangrovi", "title": "Tsuneonella mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002269345.1", "bioproject": "PRJNA224116", "biosample": "SAMN07502071", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1982042", "species_taxid": "1982042", "organism_name": "Tsuneonella mangrovi", "infraspecific_name": "strain=C9-11", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/24", "asm_name": "ASM226934v1", "asm_submitter": "Xiamen University", "gbrs_paired_asm": "GCA_002269345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/269/345/GCF_002269345.1_ASM226934v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2702851", "genome_size_ungapped": "2702851", "gc_percent": "63.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002269345.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2639", "protein_coding_gene_count": "2583", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-24", "dateModified": "2017-08-24", "datePublished": "2017-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Tsuneonella mangrovi" ], "sample_taxid": [ "1982042" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.750 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 30.0, "max": 30.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2702851", "Number of Sequences": "1", "Longest Sequences (bp)": "2702851", "N50 (bp)": "2702851", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "2594", "Average Protein Length": "319.1", "Coding Ratio (%)": "91.9", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tsuneonella rigui", "strain": "strain=KCTC 42620", "accession": "GCA_003958625.1", "taxid": 1708790, "species_taxid": 1708790, "relation_to_type": "type", "validated": true, "ani": 80.3686, "matched_fragments": 493, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella amylolytica", "strain": "strain=NS1", "accession": "GCA_003626915.1", "taxid": 2338327, "species_taxid": 2338327, "relation_to_type": "type", "validated": true, "ani": 79.9483, "matched_fragments": 464, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 79.7324, "matched_fragments": 452, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 79.7186, "matched_fragments": 432, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella deserti", "strain": "strain=CGMCC 1.15959", "accession": "GCA_014644315.1", "taxid": 2035528, "species_taxid": 2035528, "relation_to_type": "type", "validated": true, "ani": 79.7089, "matched_fragments": 399, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 79.5563, "matched_fragments": 438, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella suprasediminis", "strain": "strain=Ery12", "accession": "GCA_003605755.1", "taxid": 2306996, "species_taxid": 2306996, "relation_to_type": "type", "validated": true, "ani": 79.4643, "matched_fragments": 458, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella flava", "strain": "strain=MS1-4", "accession": "GCA_002870965.1", "taxid": 2055955, "species_taxid": 2055955, "relation_to_type": "type", "validated": true, "ani": 79.4373, "matched_fragments": 452, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 79.3749, "matched_fragments": 434, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 79.0873, "matched_fragments": 386, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=KCTC 22370", "accession": "GCA_001028625.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 79.0834, "matched_fragments": 382, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 79.0327, "matched_fragments": 399, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSM 17193", "accession": "GCA_002155305.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 79.0199, "matched_fragments": 374, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania lutimaris", "strain": "strain=S-5", "accession": "GCA_003363135.1", "taxid": 1538146, "species_taxid": 1538146, "relation_to_type": "type", "validated": true, "ani": 79.0124, "matched_fragments": 385, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania lutimaris", "strain": "strain=CECT 8624", "accession": "GCA_014191645.1", "taxid": 1538146, "species_taxid": 1538146, "relation_to_type": "type", "validated": true, "ani": 78.9942, "matched_fragments": 389, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSW-74", "accession": "GCA_001677335.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 78.9893, "matched_fragments": 379, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiapuensis", "strain": "strain=1NDW9", "accession": "GCA_019711395.1", "taxid": 2867236, "species_taxid": 2867236, "relation_to_type": "type", "validated": true, "ani": 78.9798, "matched_fragments": 378, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 78.8107, "matched_fragments": 369, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 78.7775, "matched_fragments": 375, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 78.447, "matched_fragments": 343, "total_fragments": 900, 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