{ "type": "genome", "identifier": "GCF_002273005.1", "organism": "Corynebacterium hadale", "title": "Corynebacterium hadale", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002273005.1", "bioproject": "PRJNA224116", "biosample": "SAMN07460149", "wgs_master": "NQMQ00000000.1", "refseq_category": "na", "taxid": "2026255", "species_taxid": "2026255", "organism_name": "Corynebacterium hadale", "infraspecific_name": "strain=NBT06-6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/28", "asm_name": "ASM227300v1", "asm_submitter": "Shanghai Ocean University", "gbrs_paired_asm": "GCA_002273005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/273/005/GCF_002273005.1_ASM227300v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2689254", "genome_size_ungapped": "2689254", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002273005.1-RS_2024_07_18", "annotation_date": "2024-07-18", "total_gene_count": "2530", "protein_coding_gene_count": "2418", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-28", "dateModified": "2017-08-28", "datePublished": "2017-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium hadale" ], "sample_taxid": [ "2026255" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Papua New Guinea" ], "sample_host_location_id": [], "data_size": "0.750 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2689254", "Number of Sequences": "76", "Longest Sequences (bp)": "297168", "N50 (bp)": "186768", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "2451", "Average Protein Length": "325.8", "Coding Ratio (%)": "89.1", "Number of rRNAs": "1", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium hadale", "strain": "strain=NBT06-6", "accession": "GCA_002273005.1", "taxid": 2026255, "species_taxid": 2026255, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 863, "total_fragments": 865, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Corynebacterium gottingense", "strain": "strain=DSM 103494", "accession": "GCA_003693265.1", "taxid": 2041036, "species_taxid": 2041036, "relation_to_type": "type", "validated": true, "ani": 97.3438, "matched_fragments": 724, "total_fragments": 865, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Corynebacterium godavarianum", "strain": "strain=LMG 29598", "accession": "GCA_007559235.1", "taxid": 2054421, "species_taxid": 2054421, "relation_to_type": "type", "validated": true, "ani": 97.1168, "matched_fragments": 775, "total_fragments": 865, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Corynebacterium godavarianum", "strain": "strain=PRD07", "accession": "GCA_016785885.1", "taxid": 2054421, "species_taxid": 2054421, "relation_to_type": "type", "validated": true, "ani": 97.0395, "matched_fragments": 787, "total_fragments": 865, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900156035.1", "gtdb_species": "s__Corynebacterium afermentans", "ani": 81.2233, "matched_fragments": 463, "total_fragments": 865, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.60", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_900078305.2", "gtdb_species": "s__Corynebacterium bouchesdurhonense", "ani": 80.9151, "matched_fragments": 459, "total_fragments": 865, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", 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"hadale" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }