{ "type": "genome", "identifier": "GCF_002278075.1", "organism": "Paraburkholderia aromaticivorans", "title": "Paraburkholderia aromaticivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002278075.1", "bioproject": "PRJNA224116", "biosample": "SAMN07510739", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2026199", "species_taxid": "2026199", "organism_name": "Paraburkholderia aromaticivorans", "infraspecific_name": "strain=BN5", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/30", "asm_name": "ASM227807v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_002278075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/278/075/GCF_002278075.1_ASM227807v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8907716", "genome_size_ungapped": "8907716", "gc_percent": "63.000000", "replicon_count": "8", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002278075.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "8145", "protein_coding_gene_count": "7857", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-30", "dateModified": "2017-08-30", "datePublished": "2017-08-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia aromaticivorans" ], "sample_taxid": [ "2026199" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yangju, Gyeonggi-do" ], "sample_host_location_id": [], "data_size": "2.471 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8907716", "Number of Sequences": "8", "Longest Sequences (bp)": "4378888", "N50 (bp)": "2992211", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.9", "Number of CDSs": "8113", "Average Protein Length": "311.9", "Coding Ratio (%)": "85.2", "Number of rRNAs": "12", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia aromaticivorans", "strain": "strain=BN5", "accession": "GCA_002278075.1", "taxid": 2026199, "species_taxid": 2026199, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2962, "total_fragments": 2966, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia xenovorans", "strain": "strain=LB400", "accession": "GCA_000013645.1", "taxid": 36873, "species_taxid": 36873, "relation_to_type": "type", "validated": true, "ani": 91.0864, "matched_fragments": 2038, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia xenovorans", "strain": "strain=LB400", "accession": "GCA_000756045.1", "taxid": 36873, "species_taxid": 36873, "relation_to_type": "type", "validated": true, "ani": 91.0817, "matched_fragments": 2034, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia phytofirmans", "strain": "strain=PsJN", "accession": "GCA_000020125.1", "taxid": 261302, "species_taxid": 261302, "relation_to_type": "type", "validated": true, "ani": 89.4835, "matched_fragments": 1913, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia dipogonis", "strain": "strain=ICMP 19430", "accession": "GCA_004402975.1", "taxid": 1211383, "species_taxid": 1211383, "relation_to_type": "type", "validated": true, "ani": 89.3314, "matched_fragments": 1926, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ultramafica", "strain": "strain=LMG 28614", "accession": "GCA_902859915.1", "taxid": 1544867, "species_taxid": 1544867, "relation_to_type": "type", "validated": true, "ani": 87.5874, "matched_fragments": 1611, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ginsengisoli", "strain": "strain=NBRC 100965", "accession": "GCA_000739735.1", "taxid": 311231, "species_taxid": 311231, "relation_to_type": "type", "validated": true, "ani": 87.1141, "matched_fragments": 1638, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia bryophila", "strain": "strain=LMG 23644", "accession": "GCA_003269035.1", "taxid": 420952, "species_taxid": 420952, "relation_to_type": "type", "validated": true, "ani": 86.6946, "matched_fragments": 1718, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia panacisoli", "strain": "strain=DCY113", "accession": "GCA_008369935.1", "taxid": 2603818, "species_taxid": 2603818, "relation_to_type": "type", "validated": true, "ani": 86.6691, "matched_fragments": 1798, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 86.5657, "matched_fragments": 1792, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia haematera", "strain": "strain=LMG 31837", "accession": "GCA_905220975.1", "taxid": 2793077, "species_taxid": 2793077, "relation_to_type": "type", "validated": true, "ani": 86.4761, "matched_fragments": 1637, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 86.3341, "matched_fragments": 1749, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia metrosideri", "strain": "strain=LMG 28140", "accession": "GCA_904848625.1", "taxid": 580937, "species_taxid": 580937, "relation_to_type": "type", "validated": true, "ani": 85.4915, "matched_fragments": 1569, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia kirstenboschensis", "strain": "strain=KB15", "accession": "GCA_001636975.1", "taxid": 1245436, "species_taxid": 1245436, "relation_to_type": "type", "validated": true, "ani": 84.7817, "matched_fragments": 1308, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 84.4229, "matched_fragments": 1498, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002278075.1", "gtdb_species": "s__Paraburkholderia aromaticivorans", "ani": 100.0, "matched_fragments": 2963, "total_fragments": 2966, "gtdb_taxonomy": 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