{ "type": "genome", "identifier": "GCF_002282895.1", "organism": "Paraferrimonas haliotis", "title": "Paraferrimonas haliotis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, SOA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002282895.1", "bioproject": "PRJNA224116", "biosample": "SAMN07528618", "wgs_master": "NRRB00000000.1", "refseq_category": "reference genome", "taxid": "2013866", "species_taxid": "2013866", "organism_name": "Paraferrimonas haliotis", "infraspecific_name": "strain=AFRC7-2-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/31", "asm_name": "ASM228289v1", "asm_submitter": "Third Institute of Oceanography, SOA", "gbrs_paired_asm": "GCA_002282895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/282/895/GCF_002282895.1_ASM228289v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3195199", "genome_size_ungapped": "3195199", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002282895.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2964", "protein_coding_gene_count": "2872", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-31", "dateModified": "2017-08-31", "datePublished": "2017-08-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraferrimonas haliotis" ], "sample_taxid": [ "2013866" ], "sample_host_organism": [ "abalone, Haliotis discus hannai" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Fujian" ], "sample_host_location_id": [], "data_size": "0.913 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3195199", "Number of Sequences": "19", "Longest Sequences (bp)": "827417", "N50 (bp)": "539488", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.2", "Number of CDSs": "2878", "Average Protein Length": "336.6", "Coding Ratio (%)": "91.0", "Number of rRNAs": "2", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraferrimonas haliotis", "strain": "strain=AFRC7-2-1", "accession": "GCA_002282895.1", "taxid": 2013866, "species_taxid": 2013866, "relation_to_type": "type", "validated": true, "ani": 100.0, 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5071", "accession": "GCA_009183365.2", "taxid": 38313, "species_taxid": 38313, "relation_to_type": "type", "validated": true, "ani": 76.8851, "matched_fragments": 56, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella litoralis", "strain": "strain=JCM 32306", "accession": "GCA_009828585.1", "taxid": 2282700, "species_taxid": 2282700, "relation_to_type": "type", "validated": true, "ani": 76.8643, "matched_fragments": 72, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella saliphila", "strain": "strain=JCM 32304", "accession": "GCA_014648295.1", "taxid": 2282698, "species_taxid": 2282698, "relation_to_type": "type", "validated": true, "ani": 76.8602, "matched_fragments": 66, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella saliphila", "strain": "strain=KCTC 62131", "accession": "GCA_023283695.1", "taxid": 2282698, 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