{ "type": "genome", "identifier": "GCF_002285415.1", "organism": "Actibacterium pelagium", "title": "Actibacterium pelagium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002285415.1", "bioproject": "PRJNA224116", "biosample": "SAMN07514660", "wgs_master": "NSBU00000000.1", "refseq_category": "reference genome", "taxid": "2029103", "species_taxid": "2029103", "organism_name": "Actibacterium pelagium", "infraspecific_name": "strain=JN33", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/05", "asm_name": "ASM228541v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_002285415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/285/415/GCF_002285415.1_ASM228541v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3494482", "genome_size_ungapped": "3494050", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002285415.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3427", "protein_coding_gene_count": "3346", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-05", "dateModified": "2017-09-05", "datePublished": "2017-09-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Actibacterium pelagium" ], "sample_taxid": [ "2029103" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Western Pacific Ocean" ], "sample_host_location_id": [], "data_size": "0.986 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3494482", "Number of Sequences": "7", "Longest Sequences (bp)": "1623386", "N50 (bp)": "979015", "Gap Ratio (%)": "0.012362", "GCcontent (%)": "57.8", "Number of CDSs": "3351", "Average Protein Length": "312.5", "Coding Ratio (%)": "89.9", "Number of rRNAs": "15", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actibacterium pelagium", "strain": "strain=JN33", "accession": "GCA_002285415.1", "taxid": 2029103, 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"type", "validated": true, "ani": 78.1428, "matched_fragments": 283, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquimarina", "strain": "strain=DSM 24565", "accession": "GCA_000473165.1", "taxid": 476529, "species_taxid": 476529, "relation_to_type": "type", "validated": true, "ani": 78.0583, "matched_fragments": 250, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium mucosum", "strain": "strain=KCTC 23349", "accession": "GCA_000647975.1", "taxid": 1087332, "species_taxid": 1087332, "relation_to_type": "type", "validated": true, "ani": 77.9871, "matched_fragments": 306, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter italicus", "strain": "strain=CECT 7645", "accession": "GCA_001258055.1", "taxid": 481446, "species_taxid": 481446, "relation_to_type": "type", "validated": true, "ani": 77.9499, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioclava nitratireducens", "strain": "strain=25B10_4", "accession": "GCA_001940525.2", "taxid": 1915078, "species_taxid": 1915078, "relation_to_type": "type", "validated": true, "ani": 77.6853, "matched_fragments": 229, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 77.6562, "matched_fragments": 186, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter alkaliphilus", "strain": "strain=HTCC2654", "accession": "GCA_000152805.1", "taxid": 404236, "species_taxid": 404236, "relation_to_type": "type", "validated": true, "ani": 77.6477, "matched_fragments": 248, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius bejariae", "strain": "strain=A21", "accession": "GCA_009669325.1", "taxid": 2576383, "species_taxid": 2576383, "relation_to_type": "type", "validated": true, "ani": 77.5918, "matched_fragments": 225, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.5841, "matched_fragments": 187, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum adriaticum", "strain": "strain=DSM 2781", "accession": "GCA_016583705.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 77.5766, "matched_fragments": 265, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter albidus", "strain": "strain=DSM 26922", "accession": "GCA_900107015.1", "taxid": 670155, "species_taxid": 670155, "relation_to_type": "type", "validated": true, "ani": 77.36, "matched_fragments": 175, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=CECT 8110", "accession": "GCA_900172255.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 77.3313, "matched_fragments": 214, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=DSM 29507", "accession": "GCA_003634925.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 77.2945, "matched_fragments": 216, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": 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