{
    "type": "genome",
    "identifier": "GCF_002286955.1",
    "organism": "Vreelandella alkaliphila",
    "title": "Vreelandella alkaliphila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Agricultural c and Regional Planning, Chinese Academy of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002286955.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07572982",
        "wgs_master": "NSKA00000000.1",
        "refseq_category": "na",
        "taxid": "272774",
        "species_taxid": "272774",
        "organism_name": "Vreelandella alkaliphila",
        "infraspecific_name": "strain=WN018",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/06",
        "asm_name": "ASM228695v1",
        "asm_submitter": "Institute of Agricultural c and Regional Planning, Chinese Academy of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_002286955.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/286/955/GCF_002286955.1_ASM228695v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from synonym type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4054120",
        "genome_size_ungapped": "4054120",
        "gc_percent": "52.500000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002286955.1-RS_2024_08_18",
        "annotation_date": "2024-08-18",
        "total_gene_count": "3744",
        "protein_coding_gene_count": "3635",
        "non_coding_gene_count": "81",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-06",
    "dateModified": "2017-09-06",
    "datePublished": "2017-09-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vreelandella alkaliphila"
        ],
        "sample_taxid": [
            "272774"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Binhai, Tianjin"
        ],
        "sample_host_location_id": [],
        "data_size": "1.157 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 33.0,
            "max": 33.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4054120",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "934403",
        "N50 (bp)": "761874",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.5",
        "Number of CDSs": "3630",
        "Average Protein Length": "327.1",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Halomonas humidisoli",
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                "accession": "GCA_002286955.1",
                "taxid": 2032624,
                "species_taxid": 2032624,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1331,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Halomonas alkaliphila",
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                "accession": "GCA_016107625.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Halomonas hydrothermalis",
                "strain": "strain=Slthf2",
                "accession": "GCA_011399095.1",
                "taxid": 115561,
                "species_taxid": 115561,
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                "matched_fragments": 1090,
                "total_fragments": 1333,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas venusta",
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                "accession": "GCA_007989605.1",
                "taxid": 44935,
                "species_taxid": 44935,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1134,
                "total_fragments": 1333,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas venusta",
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                "accession": "GCA_016107635.1",
                "taxid": 44935,
                "species_taxid": 44935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6788,
                "matched_fragments": 1134,
                "total_fragments": 1333,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas profundi",
                "strain": "strain=MT13",
                "accession": "GCA_019722725.1",
                "taxid": 2852117,
                "species_taxid": 2852117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3917,
                "matched_fragments": 409,
                "total_fragments": 1333,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas populi",
                "strain": "strain=MC",
                "accession": "GCA_003989825.1",
                "taxid": 2498858,
                "species_taxid": 2498858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3855,
                "matched_fragments": 400,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas profundi",
                "strain": "strain=MT13",
                "accession": "GCA_019504685.1",
                "taxid": 2852117,
                "species_taxid": 2852117,
                "relation_to_type": "type",
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                "ani": 79.3045,
                "matched_fragments": 404,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas aerodenitrificans",
                "strain": "strain=MCCC 1A11058",
                "accession": "GCA_021404405.1",
                "taxid": 2733483,
                "species_taxid": 2733483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6523,
                "matched_fragments": 137,
                "total_fragments": 1333,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas kenyensis",
                "strain": "strain=DSM 17331",
                "accession": "GCA_022341445.1",
                "taxid": 321266,
                "species_taxid": 321266,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4735,
                "matched_fragments": 120,
                "total_fragments": 1333,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_016107625.1",
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                "total_fragments": 1333,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.32",
                "min_intra_species_ani": "95.46",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 12,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002082565.1",
                "gtdb_species": "s__Halomonas sp002082565",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
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                "mean_intra_species_ani": "98.80",
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            },
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000712975.1",
                "gtdb_species": "s__Halomonas alkaliantarctica_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003989795.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Vreelandella",
        "alkaliphila"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}