{ "type": "genome", "identifier": "GCF_002286975.1", "organism": "Halomonas salipaludis", "title": "Halomonas salipaludis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Agricultural c and Regional Planning, Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002286975.1", "bioproject": "PRJNA224116", "biosample": "SAMN07573017", "wgs_master": "NSKB00000000.1", "refseq_category": "reference genome", "taxid": "2032625", "species_taxid": "2032625", "organism_name": "Halomonas salipaludis", "infraspecific_name": "strain=WRN001", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/06", "asm_name": "ASM228697v1", "asm_submitter": "Institute of Agricultural c and Regional Planning, Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_002286975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/286/975/GCF_002286975.1_ASM228697v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5475884", "genome_size_ungapped": "5475884", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002286975.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "5186", "protein_coding_gene_count": "5057", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-06", "dateModified": "2017-09-06", "datePublished": "2017-09-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas salipaludis" ], "sample_taxid": [ "2032625" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Binhai, Tianjin" ], "sample_host_location_id": [], "data_size": "1.519 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 33.0, "max": 33.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5475884", "Number of Sequences": "33", "Longest Sequences (bp)": "825534", "N50 (bp)": "588614", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "5098", "Average Protein Length": "319.8", "Coding Ratio (%)": "89.3", "Number of rRNAs": "4", "Number of tRNAs": "66", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas salipaludis", "strain": "strain=WRN001", "accession": "GCA_002286975.1", "taxid": 2032625, "species_taxid": 2032625, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 82.7076, "matched_fragments": 754, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas pacifica", "strain": "strain=NBRC 102220", "accession": "GCA_007989625.1", "taxid": 77098, "species_taxid": 77098, "relation_to_type": "type", "validated": true, "ani": 82.4811, "matched_fragments": 758, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 82.4055, "matched_fragments": 866, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alkalisoli", "strain": "strain=M5N1S17", "accession": "GCA_021412585.1", "taxid": 2907158, "species_taxid": 2907158, "relation_to_type": "type", "validated": true, "ani": 82.2679, "matched_fragments": 856, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 82.2355, "matched_fragments": 781, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas urmiana", "strain": "strain=TBZ3", "accession": "GCA_005780185.1", "taxid": 490901, "species_taxid": 490901, "relation_to_type": "type", "validated": true, "ani": 82.2342, "matched_fragments": 720, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alimentaria", "strain": "strain=DSM 15356", "accession": "GCA_009902005.1", "taxid": 147248, "species_taxid": 147248, "relation_to_type": "type", "validated": true, "ani": 82.1725, "matched_fragments": 676, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidivorans", "strain": "strain=MCCC 1A13718", "accession": "GCA_017868935.1", "taxid": 2733488, "species_taxid": 2733488, "relation_to_type": "type", "validated": true, "ani": 82.0392, "matched_fragments": 859, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 81.9998, "matched_fragments": 899, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas montanilacus", "strain": "strain=PYC7W", "accession": "GCA_003336675.1", "taxid": 2282305, "species_taxid": 2282305, "relation_to_type": "type", "validated": true, "ani": 81.7472, "matched_fragments": 831, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas bachuensis", "strain": "strain=DX6", "accession": "GCA_011742165.1", "taxid": 2717286, "species_taxid": 2717286, "relation_to_type": "type", "validated": true, "ani": 81.6265, "matched_fragments": 811, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas cerina", "strain": "strain=CECT 7282", "accession": "GCA_014192215.1", "taxid": 447424, "species_taxid": 447424, "relation_to_type": "type", "validated": true, "ani": 81.2284, "matched_fragments": 677, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", 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