{
    "type": "genome",
    "identifier": "GCF_002286985.1",
    "organism": "Halorubrum salipaludis",
    "title": "Halorubrum salipaludis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Agricultural c and Regional Planning, Chinese Academy of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002286985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07573028",
        "wgs_master": "NSKC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2032630",
        "species_taxid": "2032630",
        "organism_name": "Halorubrum salipaludis",
        "infraspecific_name": "strain=WN019",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/06",
        "asm_name": "ASM228698v1",
        "asm_submitter": "Institute of Agricultural c and Regional Planning, Chinese Academy of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_002286985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/286/985/GCF_002286985.1_ASM228698v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3506649",
        "genome_size_ungapped": "3506649",
        "gc_percent": "67.500000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002286985.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "3440",
        "protein_coding_gene_count": "3338",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-06",
    "dateModified": "2017-09-06",
    "datePublished": "2017-09-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halorubrum salipaludis"
        ],
        "sample_taxid": [
            "2032630"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Binhai, Tianjin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.945 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 33.0,
            "max": 33.0
        },
        "completeness": 87.5,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3506649",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "598689",
        "N50 (bp)": "371683",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.4",
        "Number of CDSs": "3360",
        "Average Protein Length": "299.5",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "5",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halorubrum salipaludis",
                "strain": "strain=WN019",
                "accession": "GCA_002286985.1",
                "taxid": 2032630,
                "species_taxid": 2032630,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1154,
                "total_fragments": 1154,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halorubrum salsamenti",
                "strain": "strain=Y69",
                "accession": "GCA_007671685.1",
                "taxid": 2583990,
                "species_taxid": 2583990,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.4921,
                "matched_fragments": 832,
                "total_fragments": 1154,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum amylolyticum",
                "strain": "strain=ZC67",
                "accession": "GCA_004114995.1",
                "taxid": 2508724,
                "species_taxid": 2508724,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.3503,
                "matched_fragments": 810,
                "total_fragments": 1154,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum saccharovorum",
                "strain": "strain=DSM 1137",
                "accession": "GCA_000337915.1",
                "taxid": 2248,
                "species_taxid": 2248,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2755,
                "matched_fragments": 811,
                "total_fragments": 1154,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum halophilum",
                "strain": "strain=B8",
                "accession": "GCA_000739595.1",
                "taxid": 413816,
                "species_taxid": 413816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.1121,
                "matched_fragments": 831,
                "total_fragments": 1154,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum lipolyticum",
                "strain": "strain=DSM 21995",
                "accession": "GCA_000337375.1",
                "taxid": 368624,
                "species_taxid": 368624,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.0166,
                "matched_fragments": 783,
                "total_fragments": 1154,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum persicum",
                "strain": "strain=C49",
                "accession": "GCA_002727125.1",
                "taxid": 1383844,
                "species_taxid": 1383844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.5758,
                "matched_fragments": 788,
                "total_fragments": 1154,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002286985.1",
                "gtdb_species": "s__Halorubrum sp002286985",
                "ani": 100.0,
                "matched_fragments": 1154,
                "total_fragments": 1154,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.74",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003781945.1",
                "gtdb_species": "s__Halorubrum sp003781945",
                "ani": 91.131,
                "matched_fragments": 855,
                "total_fragments": 1154,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007671685.1",
                "gtdb_species": "s__Halorubrum salsamenti",
                "ani": 90.4864,
                "matched_fragments": 832,
                "total_fragments": 1154,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004114995.1",
                "gtdb_species": "s__Halorubrum amylolyticum",
                "ani": 90.367,
                "matched_fragments": 807,
                "total_fragments": 1154,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000337915.1",
                "gtdb_species": "s__Halorubrum saccharovorum",
                "ani": 90.2755,
                "matched_fragments": 811,
                "total_fragments": 1154,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000739595.1",
                "gtdb_species": "s__Halorubrum halophilum",
                "ani": 90.1071,
                "matched_fragments": 831,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000337375.1",
                "gtdb_species": "s__Halorubrum lipolyticum",
                "ani": 90.0448,
                "matched_fragments": 782,
                "total_fragments": 1154,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.207,
        "cell_length": 0.287,
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        "optimum_tmp": 38.687,
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        "genome_size": 3372661.985,
        "gc_content": 66.134,
        "coding_genes": 3172.833,
        "rRNA16S_genes": 2.5,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": 1.0,
        "facultative_respiration": 0.13,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Halorubrum",
        "salipaludis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}