{ "type": "genome", "identifier": "GCF_002287355.1", "organism": "Tamilnaduibacter salinus", "title": "Tamilnaduibacter salinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002287355.1", "bioproject": "PRJNA224116", "biosample": "SAMN07331643", "wgs_master": "NMPM00000000.1", "refseq_category": "na", "taxid": "1484056", "species_taxid": "1484056", "organism_name": "Tamilnaduibacter salinus", "infraspecific_name": "strain=Mi-7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/06", "asm_name": "ASM228735v1", "asm_submitter": "CSIR-Institute of Microbial Technology", "gbrs_paired_asm": "GCA_002287355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/287/355/GCF_002287355.1_ASM228735v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3492795", "genome_size_ungapped": "3492795", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "197", "contig_count": "197", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002287355.1-RS_2024_12_25", "annotation_date": "2024-12-25", "total_gene_count": "3337", "protein_coding_gene_count": "3192", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-06", "dateModified": "2017-09-06", "datePublished": "2017-09-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Tamilnaduibacter salinus" ], "sample_taxid": [ "1484056" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Tamilnadu" ], "sample_host_location_id": [], "data_size": "0.992 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3492795", "Number of Sequences": "197", "Longest Sequences (bp)": "194744", "N50 (bp)": "39325", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.7", "Number of CDSs": "3162", "Average Protein Length": "317.3", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tamilnaduibacter salinus", "strain": "strain=Mi-7", "accession": "GCA_002287355.1", "taxid": 1484056, "species_taxid": 1484056, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1050, 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"below_threshold" }, { "organism_name": "Marinobacter mangrovi", "strain": "strain=CHFG3-1-5", "accession": "GCA_016798325.1", "taxid": 2803918, "species_taxid": 2803918, "relation_to_type": "type", "validated": true, "ani": 78.0875, "matched_fragments": 357, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=KCTC 23561", "accession": "GCA_014652295.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 77.7753, "matched_fragments": 219, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 77.7744, "matched_fragments": 215, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 77.7534, "matched_fragments": 255, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter segnicrescens", "strain": "strain=CGMCC 1.6489", "accession": "GCA_900111555.1", "taxid": 430453, "species_taxid": 430453, "relation_to_type": "type", "validated": true, "ani": 77.6815, "matched_fragments": 219, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lutaoensis", "strain": "strain=T5054", "accession": "GCA_001981305.1", "taxid": 135739, "species_taxid": 135739, "relation_to_type": "type", "validated": true, "ani": 77.6638, "matched_fragments": 271, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halotolerans", "strain": 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2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 76.4664, "matched_fragments": 103, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zhangzhouensis", "strain": "strain=MCCC 1A11036", "accession": "GCA_021404465.1", "taxid": 2733481, "species_taxid": 2733481, "relation_to_type": "type", "validated": true, "ani": 76.3367, "matched_fragments": 91, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylonatrum kenyense", "strain": "strain=AMT 1", "accession": "GCA_023195885.1", "taxid": 455253, "species_taxid": 455253, "relation_to_type": "type", "validated": true, "ani": 75.8597, "matched_fragments": 50, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003096655.1", "gtdb_species": 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