{ "type": "genome", "identifier": "GCF_002287375.1", "organism": "Virgibacillus profundi", "title": "Virgibacillus profundi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002287375.1", "bioproject": "PRJNA224116", "biosample": "SAMN07445110", "wgs_master": "NPOA00000000.1", "refseq_category": "reference genome", "taxid": "2024555", "species_taxid": "2024555", "organism_name": "Virgibacillus profundi", "infraspecific_name": "strain=P3-H5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/06", "asm_name": "ASM228737v1", "asm_submitter": "Institute of Microbiology, CAS", "gbrs_paired_asm": "GCA_002287375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/287/375/GCF_002287375.1_ASM228737v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4362047", "genome_size_ungapped": "4362047", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "154", "contig_count": "154", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002287375.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "4394", "protein_coding_gene_count": "4210", "non_coding_gene_count": "104", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-06", "dateModified": "2017-09-06", "datePublished": "2017-09-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Virgibacillus profundi" ], "sample_taxid": [ "2024555" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean: Southwest Indian Ridge" ], "sample_host_location_id": [], "data_size": "1.235 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4362047", "Number of Sequences": "154", "Longest Sequences (bp)": "739797", "N50 (bp)": "257952", "Gap Ratio (%)": "0.000069", "GCcontent (%)": "37.2", "Number of CDSs": "4315", "Average Protein Length": "278.1", "Coding Ratio (%)": "82.5", "Number of rRNAs": "7", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Virgibacillus profundi", "strain": "strain=P3-H5", "accession": "GCA_002287375.1", "taxid": 2024555, "species_taxid": 2024555, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"below_threshold" }, { "organism_name": "Virgibacillus doumboii", "strain": "strain=Marseille-Q1616", "accession": "GCA_902806455.1", "taxid": 2697503, "species_taxid": 2697503, "relation_to_type": "type", "validated": true, "ani": 77.5258, "matched_fragments": 216, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus massiliensis", "strain": "strain=Vm-5", "accession": "GCA_000723585.1", "taxid": 1462526, "species_taxid": 1462526, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5254, "matched_fragments": 168, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus massiliensis", "strain": "strain=Vm-5", "accession": "GCA_014905475.1", "taxid": 1462526, "species_taxid": 1462526, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5248, "matched_fragments": 168, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus bengalensis", "strain": "strain=MCCC 1K00260", "accession": "GCA_003628445.1", "taxid": 1435466, "species_taxid": 1435466, "relation_to_type": "type", "validated": true, "ani": 77.481, "matched_fragments": 185, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus damuensis", "strain": "strain=PT-20", "accession": "GCA_001618145.1", "taxid": 937928, "species_taxid": 937928, "relation_to_type": "type", "validated": true, "ani": 77.4732, "matched_fragments": 203, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus oceani", "strain": "strain=CGMCC 1.12754", "accession": "GCA_014638995.1", "taxid": 1479511, "species_taxid": 1479511, "relation_to_type": "type", "validated": true, "ani": 77.426, "matched_fragments": 233, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus polygoni", 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"GCA_003665065.1", "taxid": 2448030, "species_taxid": 2448030, "relation_to_type": "type", "validated": true, "ani": 76.927, "matched_fragments": 153, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus aquiflavi", "strain": "strain=3H-10", "accession": "GCA_019915265.1", "taxid": 2672567, "species_taxid": 2672567, "relation_to_type": "type", "validated": true, "ani": 76.1047, "matched_fragments": 51, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002287375.1", "gtdb_species": "s__Virgibacillus_G profundi", "ani": 100.0, "matched_fragments": 1415, "total_fragments": 1416, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Virgibacillus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", 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