{ "type": "genome", "identifier": "GCF_002305855.1", "organism": "Melittangium boletus DSM 14713", "title": "Melittangium boletus DSM 14713", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Max Planck Institute for Terrestrial Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002305855.1", "bioproject": "PRJNA224116", "biosample": "SAMN06850203", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1294270", "species_taxid": "83453", "organism_name": "Melittangium boletus DSM 14713", "infraspecific_name": "strain=DSM 14713", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/15", "asm_name": "ASM230585v1", "asm_submitter": "Max Planck Institute for Terrestrial Microbiology", "gbrs_paired_asm": "GCA_002305855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/305/855/GCF_002305855.1_ASM230585v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9910441", "genome_size_ungapped": "9910441", "gc_percent": "68.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002305855.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "8200", "protein_coding_gene_count": "8050", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-15", "dateModified": "2017-09-15", "datePublished": "2017-09-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Melittangium boletus DSM 14713" ], "sample_taxid": [ "1294270" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "2.688 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9910441", "Number of Sequences": "1", "Longest Sequences (bp)": "9910441", "N50 (bp)": "9910441", "Gap Ratio (%)": "0.000061", "GCcontent (%)": "68.4", "Number of CDSs": "8330", "Average Protein Length": "363.6", "Coding Ratio (%)": "91.7", "Number of rRNAs": "11", "Number of tRNAs": "69", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_003387095.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 83.5845, "matched_fragments": 2044, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_001027285.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 83.558, "matched_fragments": 2055, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium violaceum", "strain": "strain=Cb vi76", "accession": "GCA_000733295.1", "taxid": 83451, "species_taxid": 83451, "relation_to_type": "type", "validated": true, "ani": 83.5432, "matched_fragments": 1992, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella aurantiaca", "strain": "strain=DSM 17044", "accession": "GCA_900109545.1", "taxid": 41, "species_taxid": 41, "relation_to_type": "type", "validated": true, "ani": 80.8445, "matched_fragments": 1504, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 80.7816, "matched_fragments": 1507, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus interemptor", "strain": "strain=AB047A", "accession": "GCA_003668875.1", "taxid": 2316720, "species_taxid": 2316720, "relation_to_type": "type", "validated": true, "ani": 79.9519, "matched_fragments": 1284, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus exercitus", "strain": "strain=AB043A", "accession": "GCA_003611585.1", "taxid": 2316736, "species_taxid": 2316736, "relation_to_type": "type", "validated": true, "ani": 79.9073, "matched_fragments": 1244, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus coralloides", "strain": "strain=DSM 2259", "accession": "GCA_000255295.1", "taxid": 184914, "species_taxid": 184914, "relation_to_type": "type", "validated": true, "ani": 79.8895, "matched_fragments": 1383, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 79.8266, "matched_fragments": 1392, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=NBRC 100333", "accession": "GCA_007991095.1", "taxid": 33, "species_taxid": 33, "relation_to_type": "type", "validated": true, "ani": 79.8101, "matched_fragments": 1325, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=DSM 16525", "accession": "GCA_900111765.1", "taxid": 33, "species_taxid": 33, "relation_to_type": "type", "validated": true, "ani": 79.8003, "matched_fragments": 1347, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus trucidator", "strain": "strain=CA060A", "accession": "GCA_010894435.1", "taxid": 2709662, "species_taxid": 2709662, "relation_to_type": "type", "validated": true, "ani": 79.7999, "matched_fragments": 1523, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus aberystwythensis", "strain": "strain=AB050A", "accession": "GCA_003612165.1", "taxid": 2316722, "species_taxid": 2316722, "relation_to_type": "type", "validated": true, "ani": 79.7922, "matched_fragments": 1298, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 79.7732, "matched_fragments": 1348, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus fallax", "strain": "strain=DSM 14698", "accession": "GCA_012933655.1", "taxid": 394095, "species_taxid": 394095, "relation_to_type": "type", "validated": true, "ani": 79.7154, "matched_fragments": 1499, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Megalodesulfovibrio gigas", "strain": "strain=DSM 1382", "accession": "GCA_000429285.1", "taxid": 879, "species_taxid": 879, "relation_to_type": "type", "validated": true, "ani": 75.5374, "matched_fragments": 77, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium phyllosphaerae", "strain": "strain=CBMB27", "accession": "GCA_001936175.1", "taxid": 418223, "species_taxid": 418223, "relation_to_type": "suspected-type", "validated": true, "ani": 75.3775, "matched_fragments": 187, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalorhabdus denitrificans", "strain": "strain=HL 19", "accession": "GCA_900101365.1", "taxid": 381306, "species_taxid": 381306, "relation_to_type": "type", "validated": true, "ani": 75.2604, "matched_fragments": 111, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Megalodesulfovibrio gigas", "strain": "strain=ATCC 19364", "accession": "GCA_000468495.1", "taxid": 879, "species_taxid": 879, "relation_to_type": "type", "validated": true, "ani": 75.2407, "matched_fragments": 78, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces slackii", "strain": "strain=NCTC11923", "accession": "GCA_900637295.1", "taxid": 52774, "species_taxid": 52774, "relation_to_type": "type", "validated": true, "ani": 75.2172, "matched_fragments": 108, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces slackii", "strain": "strain=ATCC 49928", "accession": "GCA_000428685.1", "taxid": 52774, "species_taxid": 52774, "relation_to_type": "type", "validated": true, "ani": 74.9082, "matched_fragments": 105, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pini", "strain": "strain=PL19", "accession": "GCA_900114215.1", "taxid": 1520580, "species_taxid": 1520580, "relation_to_type": "type", "validated": true, "ani": 74.8796, "matched_fragments": 237, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=CGMCC 1.6293", "accession": "GCA_014645095.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 74.8271, "matched_fragments": 155, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=DSM 18065", "accession": "GCA_000688295.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 74.8256, "matched_fragments": 152, "total_fragments": 3303, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002305855.1", "gtdb_species": "s__Melittangium boletus", "ani": 100.0, "matched_fragments": 3301, "total_fragments": 3303, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Melittangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016904885.1", "gtdb_species": "s__Melittangium primigenium", "ani": 87.6659, "matched_fragments": 2432, "total_fragments": 3303, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Melittangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001887355.1", "gtdb_species": "s__Cystobacter ferrugineus", "ani": 85.3974, "matched_fragments": 2269, "total_fragments": 3303, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Cystobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002305875.1", "gtdb_species": "s__Cystobacter fuscus_A", "ani": 85.3681, "matched_fragments": 2319, "total_fragments": 3303, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Cystobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000335475.2", "gtdb_species": "s__Cystobacter fuscus", "ani": 85.3024, "matched_fragments": 2252, "total_fragments": 3303, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Cystobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.155, "cell_length": 0.602, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 30.0, "optimum_ph": null, "genome_size": 9910440.75, "gc_content": 68.42, "coding_genes": 7954.5, "rRNA16S_genes": 4.0, "tRNA_genes": 59.0, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Melittangium", "boletus", "DSM", "14713" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }