{ "type": "genome", "identifier": "GCF_002307495.1", "organism": "Pseudomonas abyssi", "title": "Pseudomonas abyssi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002307495.1", "bioproject": "PRJNA224116", "biosample": "SAMN07634961", "wgs_master": "NTMR00000000.1", "refseq_category": "reference genome", "taxid": "170540", "species_taxid": "170540", "organism_name": "Pseudomonas abyssi", "infraspecific_name": "strain=MT5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/17", "asm_name": "ASM230749v1", "asm_submitter": "Shanghai Ocean University", "gbrs_paired_asm": "GCA_002307495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/307/495/GCF_002307495.1_ASM230749v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4322744", "genome_size_ungapped": "4322744", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "79", "contig_count": "79", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002307495.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4078", "protein_coding_gene_count": "3971", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-17", "dateModified": "2017-09-17", "datePublished": "2017-09-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas abyssi" ], "sample_taxid": [ "170540" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.212 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4322744", "Number of Sequences": "79", "Longest Sequences (bp)": "473601", "N50 (bp)": "236029", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "3995", "Average Protein Length": "323.6", "Coding Ratio (%)": "89.7", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopseudomonas pachastrellae", "strain": "strain=CCUG 46540", "accession": "GCA_001989375.1", "taxid": 254161, "species_taxid": 254161, "relation_to_type": "type", "validated": true, "ani": 90.3133, "matched_fragments": 1075, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas pachastrellae", "strain": "strain=JCM 12285", "accession": "GCA_900114765.1", "taxid": 254161, "species_taxid": 254161, "relation_to_type": "type", "validated": true, "ani": 90.2746, "matched_fragments": 1105, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas oceani", "strain": "strain=CGMCC 1.15195", "accession": "GCA_014641295.1", "taxid": 1708783, "species_taxid": 1708783, "relation_to_type": "type", "validated": true, "ani": 84.9537, "matched_fragments": 953, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas oceani", "strain": "strain=DSM 100277", "accession": "GCA_002903165.1", "taxid": 1708783, "species_taxid": 1708783, "relation_to_type": "type", "validated": true, "ani": 84.8924, "matched_fragments": 940, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas aestusnigri", "strain": "strain=CECT 8317", "accession": "GCA_900108005.1", "taxid": 857252, "species_taxid": 857252, "relation_to_type": "type", "validated": true, "ani": 84.7947, "matched_fragments": 871, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas aestusnigri", "strain": "strain=VGXO14", "accession": "GCA_002197985.1", "taxid": 857252, "species_taxid": 857252, "relation_to_type": "type", "validated": true, "ani": 84.7749, "matched_fragments": 882, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5146, "matched_fragments": 369, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas 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