{ "type": "genome", "identifier": "GCF_002310855.1", "organism": "Pseudoalteromonas agarivorans DSM 14585", "title": "Pseudoalteromonas agarivorans DSM 14585", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002310855.1", "bioproject": "PRJNA224116", "biosample": "SAMN03380222", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1312369", "species_taxid": "176102", "organism_name": "Pseudoalteromonas agarivorans DSM 14585", "infraspecific_name": "strain=DSM 14585", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/18", "asm_name": "ASM231085v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_002310855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/310/855/GCF_002310855.1_ASM231085v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4544962", "genome_size_ungapped": "4544962", "gc_percent": "41.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002310855.1-RS_2024_08_23", "annotation_date": "2024-08-23", "total_gene_count": "4112", "protein_coding_gene_count": "3925", "non_coding_gene_count": "130", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-18", "dateModified": "2017-09-18", "datePublished": "2017-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas agarivorans DSM 14585" ], "sample_taxid": [ "1312369" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.279 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4544962", "Number of Sequences": "2", "Longest Sequences (bp)": "3701940", "N50 (bp)": "3701940", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.8", "Number of CDSs": "4021", "Average Protein Length": "329.9", "Coding Ratio (%)": "87.6", "Number of rRNAs": "25", "Number of tRNAs": "101", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas espejiana", "strain": "strain=ATCC 29659", "accession": "GCA_002221525.1", "taxid": 28107, "species_taxid": 28107, 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"validated": true, "ani": 86.0951, "matched_fragments": 1108, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=NBRC 12985", "accession": "GCA_006539245.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 86.0169, "matched_fragments": 1063, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas distincta", "strain": "strain=ATCC 700518", "accession": "GCA_000814675.1", "taxid": 77608, "species_taxid": 77608, "relation_to_type": "type", "validated": true, "ani": 83.3002, "matched_fragments": 1010, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=GFC", "accession": "GCA_002310835.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 82.0665, "matched_fragments": 782, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KMM 3549", "accession": "GCA_002310795.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8617, "matched_fragments": 797, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas undina", "strain": "strain=DSM 6065", "accession": "GCA_000238275.4", "taxid": 43660, "species_taxid": 43660, "relation_to_type": "type", "validated": true, "ani": 81.8383, "matched_fragments": 764, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KCTC 12958", "accession": "GCA_001455325.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7978, "matched_fragments": 790, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=NBRC 103034", "accession": "GCA_007991235.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 81.6016, "matched_fragments": 753, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas rhizosphaerae", "strain": "strain=RA15", "accession": "GCA_902498845.1", "taxid": 2518973, "species_taxid": 2518973, "relation_to_type": "type", "validated": true, "ani": 80.2904, "matched_fragments": 604, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nitrifigilis", "strain": "strain=NFV-1", "accession": "GCA_015686695.1", "taxid": 2789781, "species_taxid": 2789781, "relation_to_type": "type", "validated": true, "ani": 78.813, "matched_fragments": 60, 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