{ "type": "genome", "identifier": "GCF_002312815.1", "organism": "Agaribacterium haliotis", "title": "Agaribacterium haliotis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, SOA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002312815.1", "bioproject": "PRJNA224116", "biosample": "SAMN07303802", "wgs_master": "NKQJ00000000.1", "refseq_category": "reference genome", "taxid": "2013869", "species_taxid": "2013869", "organism_name": "Agaribacterium haliotis", "infraspecific_name": "strain=feces2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/19", "asm_name": "ASM231281v1", "asm_submitter": "Third Institute of Oceanography, SOA", "gbrs_paired_asm": "GCA_002312815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/312/815/GCF_002312815.1_ASM231281v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4173851", "genome_size_ungapped": "4173851", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002312815.1-RS_2024_06_16", "annotation_date": "2024-06-16", "total_gene_count": "3599", "protein_coding_gene_count": "3537", "non_coding_gene_count": "44", "pubmed_id": "28901895" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-19", "dateModified": "2017-09-19", "datePublished": "2017-09-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Agaribacterium haliotis" ], "sample_taxid": [ "2013869" ], "sample_host_organism": [ "abalone" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_003634075.1", "gtdb_species": "s__Teredinibacter sp003634075", "ani": 76.5279, "matched_fragments": 90, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Teredinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Agaribacterium", "haliotis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }