{ "type": "genome", "identifier": "GCF_002327085.1", "organism": "Neisseria weixii", "title": "Neisseria weixii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China disease prevention and control center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002327085.1", "bioproject": "PRJNA224116", "biosample": "SAMN07357044", "wgs_master": "na", "refseq_category": "na", "taxid": "1853276", "species_taxid": "1853276", "organism_name": "Neisseria weixii", "infraspecific_name": "strain=10022", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/21", "asm_name": "ASM232708v1", "asm_submitter": "China disease prevention and control center", "gbrs_paired_asm": "GCA_002327085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/327/085/GCF_002327085.1_ASM232708v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2511904", "genome_size_ungapped": "2511904", "gc_percent": "49.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-17", "total_gene_count": "2609", "protein_coding_gene_count": "2142", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-21", "dateModified": "2017-09-21", "datePublished": "2017-09-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria weixii" ], "sample_taxid": [ "1853276" ], "sample_host_organism": [ "plateau pika" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.699 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2511904", "Number of Sequences": "1", "Longest Sequences (bp)": "2511904", "N50 (bp)": "2511904", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.2", "Number of CDSs": "2758", "Average Protein Length": "251.9", "Coding Ratio (%)": "83.0", "Number of rRNAs": "9", "Number of tRNAs": "57", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria iguanae", "strain": "strain=ATCC 51483", "accession": "GCA_003013245.1", "taxid": 90242, "species_taxid": 90242, "relation_to_type": "type", "validated": true, "ani": 84.8582, "matched_fragments": 534, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria animalis", "strain": "strain=NCTC10212", "accession": "GCA_900636515.1", "taxid": 492, "species_taxid": 492, "relation_to_type": "type", "validated": true, "ani": 80.2368, "matched_fragments": 356, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria animalis", "strain": "strain=ATCC 49930", "accession": "GCA_008806995.1", "taxid": 492, "species_taxid": 492, "relation_to_type": "type", "validated": true, "ani": 80.0656, "matched_fragments": 373, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria animalis", "strain": "strain=DSM 23392", "accession": "GCA_003795365.1", "taxid": 492, "species_taxid": 492, "relation_to_type": "type", "validated": true, "ani": 80.0138, "matched_fragments": 353, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"GCA_900453805.1", "taxid": 484, "species_taxid": 484, "relation_to_type": "type", "validated": true, "ani": 79.8638, "matched_fragments": 352, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=DSM 17713", "accession": "GCA_014054945.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7024, "matched_fragments": 351, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria subflava", "strain": "strain=ATCC 49275", "accession": "GCA_005221305.1", "taxid": 28449, "species_taxid": 28449, "relation_to_type": "type", "validated": true, "ani": 79.6094, "matched_fragments": 345, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_022749515.1", "taxid": 1056807, "species_taxid": 1056807, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_002108595.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 79.2195, "matched_fragments": 360, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria lactamica", "strain": "strain=NCTC10617", "accession": "GCA_901482445.1", "taxid": 486, "species_taxid": 486, "relation_to_type": "type", "validated": true, "ani": 79.1315, "matched_fragments": 314, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella testudinis", "strain": "strain=CCUG 63373m", "accession": "GCA_022870865.1", "taxid": 1282863, "species_taxid": 1282863, "relation_to_type": "type", "validated": true, "ani": 79.0254, "matched_fragments": 364, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { 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