{ "type": "genome", "identifier": "GCF_002327105.1", "organism": "Luteimonas chenhongjianii", "title": "Luteimonas chenhongjianii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China disease prevention and control center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002327105.1", "bioproject": "PRJNA224116", "biosample": "SAMN07357069", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2006110", "species_taxid": "2006110", "organism_name": "Luteimonas chenhongjianii", "infraspecific_name": "strain=100111", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/21", "asm_name": "ASM232710v1", "asm_submitter": "China disease prevention and control center", "gbrs_paired_asm": "GCA_002327105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/327/105/GCF_002327105.1_ASM232710v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3351776", "genome_size_ungapped": "3351776", "gc_percent": "68.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002327105.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3035", "protein_coding_gene_count": "2926", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-21", "dateModified": "2017-09-21", "datePublished": "2017-09-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Luteimonas chenhongjianii" ], "sample_taxid": [ "2006110" ], "sample_host_organism": [ "plateau pika" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.908 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3351776", "Number of Sequences": "1", "Longest Sequences (bp)": "3351776", "N50 (bp)": "3351776", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.3", "Number of CDSs": "3013", "Average Protein Length": "328.0", "Coding Ratio (%)": "88.5", "Number of rRNAs": "6", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteimonas chenhongjianii", "strain": "strain=100111", "accession": "GCA_002327105.1", "taxid": 2006110, "species_taxid": 2006110, 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"matched_fragments": 789, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas marina", "strain": "strain=FR1330", "accession": "GCA_007859325.1", "taxid": 488485, "species_taxid": 488485, "relation_to_type": "type", "validated": true, "ani": 81.6103, "matched_fragments": 652, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas colneyensis", "strain": "strain=Sa2BVA3", "accession": "GCA_014836665.1", "taxid": 2762230, "species_taxid": 2762230, "relation_to_type": "type", "validated": true, "ani": 81.0732, "matched_fragments": 563, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas padinae", "strain": "strain=KCTC 52403", "accession": "GCA_014652935.1", "taxid": 1714359, "species_taxid": 1714359, "relation_to_type": "type", "validated": true, "ani": 80.9681, "matched_fragments": 584, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas terricola", "strain": "strain=CGMCC 1.8985", "accession": "GCA_014645675.1", "taxid": 645597, "species_taxid": 645597, "relation_to_type": "type", "validated": true, "ani": 80.8593, "matched_fragments": 548, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas terricola", "strain": "strain=BZ92r", "accession": "GCA_004352845.1", "taxid": 645597, "species_taxid": 645597, "relation_to_type": "type", "validated": true, "ani": 80.7957, "matched_fragments": 550, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas salinisoli", "strain": "strain=SJ-92", "accession": "GCA_013425525.1", "taxid": 2752307, "species_taxid": 2752307, "relation_to_type": "type", "validated": true, "ani": 80.4967, "matched_fragments": 620, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 80.44, "matched_fragments": 488, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 80.1557, "matched_fragments": 459, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas panaciterrae", "strain": "strain=Gsoil 068", "accession": "GCA_020511115.1", "taxid": 363885, "species_taxid": 363885, "relation_to_type": "type", "validated": true, "ani": 80.102, "matched_fragments": 511, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas japonensis", "strain": 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