{
    "type": "genome",
    "identifier": "GCF_002355275.1",
    "organism": "Rhizorhabdus dicambivorans",
    "title": "Rhizorhabdus dicambivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002355275.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07626873",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1850238",
        "species_taxid": "1850238",
        "organism_name": "Rhizorhabdus dicambivorans",
        "infraspecific_name": "strain=Ndbn-20",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/25",
        "asm_name": "ASM235527v1",
        "asm_submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "GCA_002355275.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/355/275/GCF_002355275.1_ASM235527v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5541299",
        "genome_size_ungapped": "5541299",
        "gc_percent": "65.500000",
        "replicon_count": "5",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002355275.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "5328",
        "protein_coding_gene_count": "5167",
        "non_coding_gene_count": "58",
        "pubmed_id": "27422839"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-25",
    "dateModified": "2017-09-25",
    "datePublished": "2017-09-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhizorhabdus dicambivorans"
        ],
        "sample_taxid": [
            "1850238"
        ],
        "sample_host_organism": [
            "not collected"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Nanjing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.514 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5541299",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "5026772",
        "N50 (bp)": "5026772",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.3",
        "Number of CDSs": "5296",
        "Average Protein Length": "313.6",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rhizorhabdus dicambivorans",
                "strain": "strain=Ndbn-20",
                "accession": "GCA_002355275.1",
                "taxid": 1850238,
                "species_taxid": 1850238,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1835,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhizorhabdus histidinilytica",
                "strain": "strain=UM2",
                "accession": "GCA_900167915.1",
                "taxid": 439228,
                "species_taxid": 439228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9745,
                "matched_fragments": 920,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizorhabdus phycosphaerae",
                "strain": "strain=MK52",
                "accession": "GCA_011044255.1",
                "taxid": 2711156,
                "species_taxid": 2711156,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0277,
                "matched_fragments": 725,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas fennica",
                "strain": "strain=K101",
                "accession": "GCA_003034225.1",
                "taxid": 114404,
                "species_taxid": 114404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1099,
                "matched_fragments": 592,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas oleivorans",
                "strain": "strain=FW-11",
                "accession": "GCA_003050615.1",
                "taxid": 1735121,
                "species_taxid": 1735121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9911,
                "matched_fragments": 491,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas formosensis",
                "strain": "strain=CC-Nfb-2",
                "accession": "GCA_009755815.1",
                "taxid": 861534,
                "species_taxid": 861534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4679,
                "matched_fragments": 556,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas jatrophae",
                "strain": "strain=S5-249",
                "accession": "GCA_900113315.1",
                "taxid": 1166337,
                "species_taxid": 1166337,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.25,
                "matched_fragments": 477,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas changnyeongensis",
                "strain": "strain=C33",
                "accession": "GCA_009913435.1",
                "taxid": 2698679,
                "species_taxid": 2698679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.239,
                "matched_fragments": 419,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas solaris",
                "strain": "strain=R4DWN",
                "accession": "GCA_007785815.1",
                "taxid": 2529389,
                "species_taxid": 2529389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1873,
                "matched_fragments": 487,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas azotifigens",
                "strain": "strain=NBRC 15497",
                "accession": "GCA_002091475.1",
                "taxid": 330920,
                "species_taxid": 330920,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0976,
                "matched_fragments": 488,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas morindae",
                "strain": "strain=NBD5",
                "accession": "GCA_023822065.1",
                "taxid": 1541170,
                "species_taxid": 1541170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0379,
                "matched_fragments": 503,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas alpina",
                "strain": "strain=DSM 22537",
                "accession": "GCA_025370095.1",
                "taxid": 653931,
                "species_taxid": 653931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5,
                "matched_fragments": 409,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas hylomeconis",
                "strain": "strain=CCTCC AB 2013304",
                "accession": "GCA_025370105.1",
                "taxid": 1395958,
                "species_taxid": 1395958,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4406,
                "matched_fragments": 443,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas deserti",
                "strain": "strain=GL-C-18",
                "accession": "GCA_003012735.1",
                "taxid": 2116704,
                "species_taxid": 2116704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2137,
                "matched_fragments": 406,
                "total_fragments": 1844,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002355275.1",
                "gtdb_species": "s__Rhizorhabdus dicambivorans",
                "ani": 100.0,
                "matched_fragments": 1833,
                "total_fragments": 1844,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000016765.1",
                "gtdb_species": "s__Rhizorhabdus wittichii",
                "ani": 85.1799,
                "matched_fragments": 938,
                "total_fragments": 1844,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_004297635.1",
                "gtdb_species": "s__Rhizorhabdus sp004297635",
                "ani": 84.9759,
                "matched_fragments": 455,
                "total_fragments": 1844,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.78",
                "min_intra_species_ani": "98.78",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900167915.1",
                "gtdb_species": "s__Rhizorhabdus histidinilytica",
                "ani": 84.9646,
                "matched_fragments": 919,
                "total_fragments": 1844,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "99.18",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001015195.1",
                "gtdb_species": "s__Rhizorhabdus sp001015195",
                "ani": 84.7824,
                "matched_fragments": 928,
                "total_fragments": 1844,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001428605.1",
                "gtdb_species": "s__Rhizorhabdus sp001428605",
                "ani": 84.2132,
                "matched_fragments": 915,
                "total_fragments": 1844,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001429065.1",
                "gtdb_species": "s__Rhizorhabdus sp001429065",
                "ani": 84.0107,
                "matched_fragments": 887,
                "total_fragments": 1844,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018006725.1",
                "gtdb_species": "s__Rhizorhabdus sp018006725",
                "ani": 82.4677,
                "matched_fragments": 712,
                "total_fragments": 1844,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011044255.1",
                "gtdb_species": "s__Rhizorhabdus sp011044255",
                "ani": 82.0759,
                "matched_fragments": 726,
                "total_fragments": 1844,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 5541299.5,
        "gc_content": 65.316,
        "coding_genes": 5050.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 49.0,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Rhizorhabdus",
        "dicambivorans"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}