{ "type": "genome", "identifier": "GCF_002355335.1", "organism": "Variibacter gotjawalensis", "title": "Variibacter gotjawalensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology (KRIBB)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002355335.1", "bioproject": "PRJNA224116", "biosample": "SAMD00039968", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1333996", "species_taxid": "1333996", "organism_name": "Variibacter gotjawalensis", "infraspecific_name": "strain=GJW-30", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/20", "asm_name": "ASM235533v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology (KRIBB)", "gbrs_paired_asm": "GCA_002355335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/355/335/GCF_002355335.1_ASM235533v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4586237", "genome_size_ungapped": "4586237", "gc_percent": "62.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002355335.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "4489", "protein_coding_gene_count": "4411", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-20", "dateModified": "2015-11-20", "datePublished": "2015-11-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Variibacter gotjawalensis" ], "sample_taxid": [ "1333996" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.269 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4586237", "Number of Sequences": "1", "Longest Sequences (bp)": "4586237", "N50 (bp)": "4586237", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "4473", "Average Protein Length": "303.4", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Variibacter gotjawalensis", "strain": "strain=GJW-30", "accession": "GCA_002355335.1", "taxid": 1333996, "species_taxid": 1333996, 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"below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 2734909, "relation_to_type": "type", "validated": true, "ani": 77.3295, "matched_fragments": 377, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 77.3244, "matched_fragments": 410, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 77.3005, "matched_fragments": 390, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"accession": "GCA_000010525.1", "taxid": 7, "species_taxid": 7, "relation_to_type": "type", "validated": true, "ani": 76.9664, "matched_fragments": 215, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium rhizolycopersici", "strain": "strain=DBTS2", "accession": "GCA_013378445.1", "taxid": 2746702, "species_taxid": 2746702, "relation_to_type": "type", "validated": true, "ani": 76.8636, "matched_fragments": 171, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002355335.1", "gtdb_species": "s__Variibacter gotjawalensis", "ani": 100.0, "matched_fragments": 1528, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Variibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", 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