{ "type": "genome", "identifier": "GCF_002355775.1", "organism": "Mycobacterium ulcerans subsp. shinshuense", "title": "Mycobacterium ulcerans subsp. shinshuense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Infectious Diseases", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002355775.1", "bioproject": "PRJNA224116", "biosample": "SAMD00056531", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1124626", "species_taxid": "1809", "organism_name": "Mycobacterium ulcerans subsp. shinshuense", "infraspecific_name": "strain=ATCC 33728", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/04", "asm_name": "ASM235577v1", "asm_submitter": "National Institute of Infectious Diseases", "gbrs_paired_asm": "GCA_002355775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/355/775/GCF_002355775.1_ASM235577v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6066298", "genome_size_ungapped": "6066298", "gc_percent": "65.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002355775.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5303", "protein_coding_gene_count": "4590", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-04", "dateModified": "2016-08-04", "datePublished": "2016-08-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium ulcerans subsp. shinshuense" ], "sample_taxid": [ "1124626" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Nagano, Nagano" ], "sample_host_location_id": [], "data_size": "1.639 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6066298", "Number of Sequences": "2", "Longest Sequences (bp)": "5899681", "N50 (bp)": "5899681", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.6", "Number of CDSs": "5566", "Average Protein Length": "322.9", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium pseudoshottsii", "strain": "strain=JCM 15466", "accession": "GCA_003584745.1", "taxid": 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