# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_9	LOCUS_00060	sequence1:12482..12706(+)	internal_stop_codon	12704..12706(+)		WP_003899026.1	PPE family protein	100.0	17.3	64.9
MGA_10	LOCUS_00070	sequence1:12707..13738(+)	internal_stop_codon	12704..12706(+)		WP_003409179.1	PPE family protein	94.5	75.7	37.4
MGA_13	LOCUS_00100	sequence1:16569..17537(+)	partial			WP_003899026.1	PPE family protein	66.5	51.5	33.5
MGA_14	LOCUS_00110	sequence1:17606..18361(-)	partial			WP_003900586.1	gamma-glutamyl-gamma-aminobutyrate hydrolase	91.6	74.7	75.2
MGA_25	LOCUS_00220	sequence1:30109..30363(+)	partial			WP_003899522.1	DUF2631 domain-containing protein	81.0	69.2	73.6
MGA_35	LOCUS_00310	sequence1:40312..41427(+)	internal_stop_codon	41425..41427(+)		WP_010938554.1	glutamine synthetase III	100.0	51.2	64.2
MGA_36	LOCUS_00320	sequence1:41443..42489(+)	internal_stop_codon	41425..41427(+)		WP_010938554.1	glutamine synthetase III	99.7	47.8	58.3
MGA_37	LOCUS_00330	sequence1:42758..44038(-)	partial			WP_003412039.1	PE family protein	47.2	48.9	38.7
MGA_41	LOCUS_00370	sequence1:47137..47925(-)	frameshift		48056	WP_005081393.1	APC family permease	98.1	45.7	57.5
MGA_42	LOCUS_00380	sequence1:47865..48854(-)	frameshift		48056	WP_005081393.1	APC family permease	79.9	46.6	72.2
MGA_44	LOCUS_00400	sequence1:50502..51278(-)	frameshift		51346	WP_014877153.1	gamma-aminobutyraldehyde dehydrogenase	99.6	51.9	79.8
MGA_45	LOCUS_00410	sequence1:51278..51991(-)	frameshift		51346	WP_014877153.1	gamma-aminobutyraldehyde dehydrogenase	90.3	43.2	70.6
MGA_56	LOCUS_00520	sequence1:62534..63634(+)	partial			WP_003417421.1	PDZ-interacting protease regulator Ppr1	66.9	77.2	38.0
MGA_57	LOCUS_00530	sequence1:63615..63890(-)	partial			WP_003419334.1	PPE family protein	96.7	15.2	52.3
MGA_58	LOCUS_00540	sequence1:64129..66876(+)	partial			WP_010950570.1	PE domain-containing protein	33.7	30.1	52.1
MGA_60	LOCUS_00560	sequence1:67429..68226(+)	internal_stop_codon	67420..67422(+)		WP_003899159.1	hypothetical protein	50.9	41.8	45.9
MGA_62	LOCUS_00580	sequence1:69601..69798(+)	partial			WP_003408840.1	effector	98.5	68.1	84.4
MGA_63	LOCUS_00590	sequence1:70035..71135(+)	frameshift,internal_stop_codon	71133..71135(+)	71249	WP_010886173.1	PE family protein	41.5	19.7	38.8
MGA_66	LOCUS_00620	sequence1:73595..74023(+)	frameshift		74149	WP_005110336.1	site-specific integrase	81.7	29.8	68.1
MGA_71	LOCUS_00660	sequence1:79581..81359(+)	frameshift		80948	WP_048061075.1	cation-transporting P-type ATPase	80.6	56.1	35.7
MGA_72	LOCUS_00670	sequence1:81319..82179(+)	partial			WP_013227286.1	cation-transporting P-type ATPase	91.3	30.0	45.2
MGA_74	LOCUS_00690	sequence1:82652..83434(-)	partial			WP_066567687.1	hypothetical protein	36.2	48.8	37.5
MGA_89	LOCUS_00840	sequence1:99050..101539(+)	partial			WP_003408545.1	ATP transporter ATP-binding protein/permease	64.2	61.8	45.8
MGA_95	LOCUS_00900	sequence1:108298..114741(+)	frameshift		114528,113635,114308,112614,114342,112572,114525,113599	WP_169347939.1	non-ribosomal peptide synthase/polyketide synthase	48.1	15.7	38.1
MGA_96	LOCUS_00910	sequence1:114659..117373(+)	frameshift		114528	WP_003113143.1	non-ribosomal peptide synthetase	85.7	31.0	34.2
MGA_97	LOCUS_00920	sequence1:117393..117905(+)	partial			WP_010974487.1	flavin reductase	80.6	41.8	38.7
MGA_101	LOCUS_00940	sequence1:122495..122992(-)	frameshift		123009,122499	WP_003411973.1	nitrate/nitrite transporter	99.4	31.1	66.5
MGA_102	LOCUS_00950	sequence1:122989..124017(-)	frameshift		123009	WP_003411973.1	nitrate/nitrite transporter	98.5	65.0	71.5
MGA_106	LOCUS_00990	sequence1:129926..131317(+)	frameshift		131194	WP_011730196.1	adenylate/guanylate cyclase domain-containing protein	79.5	68.8	50.5
MGA_107	LOCUS_01000	sequence1:132527..132985(+)	frameshift		132904	WP_003401488.1	type VII secretion system ESX-3 target PPE4	82.9	24.8	63.8
MGA_108	LOCUS_01010	sequence1:132982..133887(+)	frameshift		132904	WP_003899661.1	PPE domain-containing protein	95.3	78.7	29.0
MGA_109	LOCUS_01020	sequence1:134202..134858(-)	partial			WP_003906797.1	multidrug resistance protein Stp	91.7	37.2	84.5
MGA_111	LOCUS_01030	sequence1:136125..136559(-)	partial			WP_003906797.1	multidrug resistance protein Stp	93.1	25.0	82.1
MGA_121	LOCUS_01130	sequence1:145944..146195(+)	internal_stop_codon	146193..146195(+)		WP_003899282.1	TPM domain-containing protein	100.0	12.6	66.3
MGA_122	LOCUS_01140	sequence1:146202..147932(+)	internal_stop_codon	146193..146195(+)		WP_003899282.1	TPM domain-containing protein	94.1	81.8	66.1
MGA_126	LOCUS_01180	sequence1:149264..149608(-)	partial			WP_011391058.1	transposase	66.7	49.3	45.5
MGA_128	LOCUS_01190	sequence1:151083..151781(+)	frameshift		151631	WP_003899284.1	phospholipase C	90.5	41.7	77.4
MGA_129	LOCUS_01200	sequence1:151697..152059(+)	frameshift		151631	WP_003899284.1	phospholipase C	100.0	23.6	80.8
MGA_131	LOCUS_01210	sequence1:153610..154722(-)	partial			WP_010950703.1	PPE family protein	77.0	41.9	44.4
MGA_140	LOCUS_01300	sequence1:161915..162121(-)	partial			WP_003412226.1	hypothetical protein	64.7	43.4	61.2
MGA_157	LOCUS_01470	sequence1:186813..187379(+)	partial			WP_003973221.1	GNAT family N-acetyltransferase	90.4	74.0	48.0
MGA_171	LOCUS_01610	sequence1:202548..203039(-)	frameshift,internal_stop_codon	202548..202550(-)	203049	WP_003400655.1	dormancy-associated translation inhibitor	98.8	59.0	67.1
MGA_194	LOCUS_01840	sequence1:229457..231052(+)	partial			WP_003911027.1	PE family protein	23.0	27.8	59.8
MGA_197	LOCUS_01860	sequence1:233012..233476(-)	frameshift		233513	WP_003412357.1	transglutaminase family protein	100.0	55.2	84.4
MGA_202	LOCUS_01910	sequence1:237966..238616(-)	frameshift		238740	WP_003412371.1	ComEC/Rec2 family competence protein	100.0	42.0	60.2
MGA_203	LOCUS_01920	sequence1:238504..239541(-)	frameshift		238740	WP_003412371.1	ComEC/Rec2 family competence protein	76.2	50.6	64.3
MGA_225	LOCUS_02140	sequence1:264878..266179(-)	frameshift		266178	WP_003412557.1	adenylate/guanylate cyclase domain-containing protein	100.0	59.3	79.7
MGA_226	LOCUS_02150	sequence1:266137..267072(-)	frameshift		266181	WP_003412557.1	adenylate/guanylate cyclase domain-containing protein	95.8	40.8	73.2
MGA_240	LOCUS_02260	sequence1:282167..283525(-)	partial			WP_010886165.1	PE family protein	26.3	7.7	58.8
MGA_253	LOCUS_02390	sequence1:298755..299486(-)	partial			WP_003412613.1	resuscitation-promoting factor protein RpfE	33.7	47.7	82.9
MGA_269	LOCUS_02540	sequence1:319678..321369(-)	partial			WP_099318959.1	PE family protein	20.6	25.5	46.2
MGA_275	LOCUS_02600	sequence1:328466..329635(+)	frameshift		328319	WP_003899285.1	phospholipase C	100.0	76.0	78.9
MGA_276	LOCUS_02610	sequence1:329663..331402(-)	partial			WP_000615086.1	alpha/beta fold hydrolase	97.6	49.9	31.4
MGA_277	LOCUS_02620	sequence1:331486..332433(-)	internal_stop_codon	331486..331488(-),332476..332478(-)		WP_011730278.1	MFS transporter	98.1	54.2	51.3
MGA_278	LOCUS_02630	sequence1:332476..333021(-)	internal_stop_codon	332476..332478(-)		WP_011730278.1	MFS transporter	86.7	27.6	69.4
MGA_285	LOCUS_02700	sequence1:342921..343445(-)	partial			WP_003412710.1	single-stranded DNA-binding protein	72.4	78.3	87.3
MGA_288	LOCUS_02730	sequence1:345040..346104(-)	internal_stop_codon	346225..346227(-)		WP_010950725.1	glycerol-3-phosphate 1-O-acyltransferase	98.3	44.1	82.5
MGA_289	LOCUS_02740	sequence1:346225..347406(-)	internal_stop_codon	346225..346227(-)		WP_003917012.1	glycerol-3-phosphate 1-O-acyltransferase	100.0	50.3	83.9
MGA_293	LOCUS_02780	sequence1:352709..353335(+)	frameshift		353293	WP_003409976.1	cutinase Cfp21	77.4	68.7	50.9
MGA_299	LOCUS_02830	sequence1:361831..362682(-)	internal_stop_codon	361831..361833(-)		WP_003412761.1	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	100.0	77.1	81.6
MGA_316	LOCUS_02990	sequence1:381370..381969(-)	partial			WP_013226070.1	TetR/AcrR family transcriptional regulator	42.2	40.0	45.2
MGA_330	LOCUS_03130	sequence1:395975..396304(+)	frameshift,internal_stop_codon	396302..396304(+)	396361	WP_011730378.1	DUF3556 domain-containing protein	100.0	18.7	65.1
MGA_331	LOCUS_03140	sequence1:396376..397713(+)	frameshift,internal_stop_codon	396302..396304(+)	396364	WP_010950497.1	DUF3556 domain-containing protein	98.7	76.7	62.1
MGA_332	LOCUS_03150	sequence1:397825..398052(-)	partial			WP_003412942.1	DUF3618 domain-containing protein	68.0	68.0	72.5
MGA_337	LOCUS_03200	sequence1:401859..402731(+)	internal_stop_codon	402729..402731(+)		WP_011728918.1	DUF2339 domain-containing protein	63.1	27.6	44.3
MGA_338	LOCUS_03210	sequence1:402783..403766(+)	frameshift,internal_stop_codon	402729..402731(+),403764..403766(+)	403775	WP_011728918.1	DUF2339 domain-containing protein	100.0	53.7	39.6
MGA_343	LOCUS_03260	sequence1:414951..416093(+)	partial			WP_010926041.1	aromatic ring-hydroxylating dioxygenase subunit alpha	57.1	54.0	29.0
MGA_350	LOCUS_03320	sequence1:422473..422679(+)	internal_stop_codon	422677..422679(+)		WP_011729162.1	MDR family MFS transporter	67.6	6.7	69.6
MGA_351	LOCUS_03330	sequence1:422680..424161(+)	internal_stop_codon	422677..422679(+)		WP_011729162.1	MDR family MFS transporter	93.1	66.6	64.8
MGA_358	LOCUS_03390	sequence1:433377..434051(+)	internal_stop_codon	434049..434051(+)		WP_003406326.1	MFS transporter	100.0	38.7	54.0
MGA_359	LOCUS_03400	sequence1:434064..434519(+)	internal_stop_codon	434049..434051(+)		WP_003898791.1	MFS transporter	100.0	25.7	51.7
MGA_360	LOCUS_03410	sequence1:434642..434884(-)	partial			WP_011728745.1	LLM class flavin-dependent oxidoreductase	91.2	25.7	67.1
MGA_362	LOCUS_03420	sequence1:436049..436498(-)	partial			WP_011728745.1	LLM class flavin-dependent oxidoreductase	94.6	50.0	69.0
MGA_364	LOCUS_03440	sequence1:437634..438620(+)	frameshift,internal_stop_codon	438619..438621(+)	438456,438422	WP_011730097.1	acyl-CoA dehydrogenase family protein	87.8	73.9	41.0
MGA_375	LOCUS_03550	sequence1:448726..449601(+)	internal_stop_codon	449599..449601(+),449716..449718(+)		WP_011728227.1	class I adenylate-forming enzyme family protein	99.0	55.6	55.6
MGA_376	LOCUS_03560	sequence1:449731..450252(+)	internal_stop_codon	449599..449601(+),449716..449718(+)		WP_011728227.1	class I adenylate-forming enzyme family protein	98.3	33.6	61.2
MGA_380	LOCUS_03600	sequence1:453052..453996(-)	frameshift		454085	WP_011728360.1	CoA transferase	98.4	75.4	60.3
MGA_384	LOCUS_03640	sequence1:457534..458265(-)	frameshift		458296	WP_003895326.1	phosphotransferase	99.2	67.9	66.0
MGA_393	LOCUS_03730	sequence1:468142..468873(+)	partial			WP_235624115.1	hypothetical protein	67.1	81.2	55.4
MGA_394	LOCUS_03740	sequence1:469140..469631(-)	frameshift		469641	WP_042510635.1	pyruvate dehydrogenase	99.4	20.8	73.5
MGA_395	LOCUS_03750	sequence1:469600..471465(-)	frameshift		469641	WP_042510635.1	pyruvate dehydrogenase	97.4	75.4	81.5
MGA_397	LOCUS_03770	sequence1:472459..472959(+)	internal_stop_codon	472957..472959(+)		WP_003899112.1	CAP domain-containing protein	85.5	64.3	74.6
MGA_413	LOCUS_03930	sequence1:487354..487887(-)	frameshift		487952	WP_003898829.1	DUF2017 domain-containing protein	97.7	80.7	79.0
MGA_454	LOCUS_04340	sequence1:540195..540713(-)	partial			WP_010886117.1	PE family protein	68.6	8.6	44.9
MGA_457	LOCUS_04370	sequence1:544337..544696(-)	partial			WP_011123284.1	YciI family protein	84.0	45.5	43.6
MGA_463	LOCUS_04430	sequence1:549870..551168(+)	partial			WP_164929952.1	DMT family transporter	66.7	80.8	44.8
MGA_464	LOCUS_04440	sequence1:551053..551700(+)	partial			WP_003642345.1	TMEM175 family protein	45.1	50.5	35.1
MGA_471	LOCUS_04510	sequence1:557953..559704(+)	partial			WP_011144393.1	potassium channel protein	88.2	74.9	26.6
MGA_472	LOCUS_04520	sequence1:559713..561116(-)	partial			WP_010886177.1	PE family protein	26.1	20.9	57.4
MGA_473	LOCUS_04530	sequence1:561214..561378(-)	internal_stop_codon	561403..561405(-)		WP_003896372.1	LLM class flavin-dependent oxidoreductase	94.4	17.4	60.8
MGA_474	LOCUS_04540	sequence1:561403..562086(-)	internal_stop_codon	561403..561405(-)		WP_003896372.1	LLM class flavin-dependent oxidoreductase	100.0	77.5	73.6
MGA_497	LOCUS_04770	sequence1:586389..587678(-)	frameshift		586424,586421,586430	WP_010886133.1	PE family protein	30.1	25.9	61.2
MGA_498	LOCUS_04780	sequence1:588396..588728(+)	partial			WP_003406566.1	DUF732 domain-containing protein	71.8	69.9	73.4
MGA_504	LOCUS_04840	sequence1:593428..595218(+)	partial			WP_010950514.1	serine/threonine-protein kinase PknH/PknJ	69.6	66.1	76.6
MGA_509	LOCUS_04890	sequence1:599335..599799(+)	frameshift		599730	WP_003902894.1	acyl-CoA dehydrogenase family protein	81.2	32.2	85.6
MGA_520	LOCUS_04980	sequence1:608318..610171(+)	partial			WP_010886110.1	serine/threonine protein kinase PknH	70.7	67.9	63.4
MGA_521	LOCUS_04990	sequence1:610217..612484(+)	frameshift,internal_stop_codon	612479..612481(+)	612412	WP_030872986.1	FHA domain-containing protein	83.8	74.1	44.1
MGA_522	LOCUS_05000	sequence1:613017..615020(+)	partial			WP_010886110.1	serine/threonine protein kinase PknH	44.4	47.3	86.8
MGA_526	LOCUS_05040	sequence1:618699..619232(+)	partial			WP_011730074.1	hypothetical protein	70.1	62.0	42.7
MGA_537	LOCUS_05150	sequence1:629988..632030(+)	partial			WP_010886105.1	PE family protein	22.4	21.9	55.9
MGA_539	LOCUS_05170	sequence1:632669..633442(+)	partial			WP_003900088.1	PPE family protein	69.6	30.2	50.3
MGA_562	LOCUS_05400	sequence1:661956..662624(+)	partial			WP_003406288.1	DUF4190 domain-containing protein	37.4	41.9	68.7
MGA_569	LOCUS_05470	sequence1:669387..669791(-)	partial			WP_003406258.1	anti-sigma E factor RseA	84.3	73.4	84.1
MGA_577	LOCUS_05550	sequence1:678188..679999(+)	partial			WP_010950464.1	PE family protein	20.2	19.4	63.9
MGA_578	LOCUS_05560	sequence1:680244..681956(+)	partial			WP_010886177.1	PE family protein	21.4	20.9	53.3
MGA_581	LOCUS_05590	sequence1:684367..684660(+)	frameshift		684338	WP_003898773.1	glycogen synthase	99.0	24.8	86.5
MGA_604	LOCUS_05810	sequence1:708868..709416(+)	frameshift		709407	WP_013224382.1	OB-fold domain-containing protein	87.4	50.3	47.8
MGA_605	LOCUS_05820	sequence1:709416..709844(+)	frameshift		709407	WP_013224382.1	OB-fold domain-containing protein	76.1	35.4	49.5
MGA_607	LOCUS_05840	sequence1:710293..710736(+)	internal_stop_codon	710734..710736(+)		WP_003419287.1	lipid-transfer protein	97.3	38.1	55.8
MGA_608	LOCUS_05850	sequence1:710761..711462(+)	internal_stop_codon	710734..710736(+)		WP_013224384.1	lipid-transfer protein	97.0	57.8	64.6
MGA_629	LOCUS_06050	sequence1:737934..738452(+)	frameshift		738392	WP_003976304.1	MFS transporter	93.6	33.5	42.0
MGA_630	LOCUS_06060	sequence1:738359..739489(+)	frameshift		738389	WP_011030563.1	MFS transporter	95.2	67.9	37.9
MGA_642	LOCUS_06180	sequence1:752591..753637(-)	partial			WP_003418011.1	anti-sigma D factor RsdA	67.0	75.9	65.2
MGA_647	LOCUS_06230	sequence1:758052..759047(+)	frameshift,internal_stop_codon	759045..759047(+)	758906,759060	WP_003419334.1	PPE family protein	63.1	38.2	51.2
MGA_650	LOCUS_06250	sequence1:760805..760996(+)	partial			WP_003419334.1	PPE family protein	96.8	10.5	50.8
MGA_652	LOCUS_06270	sequence1:761740..762360(+)	frameshift		762162,762180,762210	WP_003900088.1	PPE family protein	69.9	24.6	50.7
MGA_653	LOCUS_06280	sequence1:762357..763259(+)	frameshift		762216,762171,762204	WP_003419334.1	PPE family protein	88.0	44.0	43.8
MGA_680	LOCUS_06550	sequence1:788091..790883(-)	frameshift		790891	WP_003912232.1	type VII secretion system ESX-4 FtsK/SpoIIIE family ATPase EccC4	99.6	75.1	63.7
MGA_681	LOCUS_06560	sequence1:790793..791770(-)	frameshift		790891	WP_010950889.1	type VII secretion system ESX-4 FtsK/SpoIIIE family ATPase EccC4	90.5	23.9	54.6
MGA_687	LOCUS_06620	sequence1:797938..799392(+)	internal_stop_codon	799390..799392(+)		WP_010950891.1	allantoin permease	98.1	84.5	83.2
MGA_688	LOCUS_06630	sequence1:799767..800498(+)	internal_stop_codon	800496..800498(+)		WP_003414680.1	PPE family protein	85.2	51.2	51.7
MGA_690	LOCUS_06650	sequence1:800992..801993(+)	frameshift		801948	WP_003408416.1	PPE family protein	97.3	84.7	45.4
MGA_727	LOCUS_07020	sequence1:835587..836552(-)	internal_stop_codon	836598..836600(-)		WP_003898564.1	signal peptide peptidase SppA	99.7	51.4	79.4
MGA_728	LOCUS_07030	sequence1:836598..837389(-)	internal_stop_codon	836598..836600(-)		WP_003898564.1	signal peptide peptidase SppA	100.0	41.6	77.6
MGA_744	LOCUS_07190	sequence1:847815..847952(-)	internal_stop_codon	847815..847817(-)		WP_011727677.1	sulfatase-like hydrolase/transferase	84.4	4.9	76.3
MGA_763	LOCUS_07370	sequence1:862531..864012(+)	internal_stop_codon	864010..864012(+)		WP_003901256.1	PPE family protein	99.6	75.0	68.8
MGA_764	LOCUS_07380	sequence1:864013..864516(+)	internal_stop_codon	864010..864012(+)		WP_010950605.1	PPE family protein	97.6	24.3	61.3
MGA_775	LOCUS_07490	sequence1:874926..875555(-)	frameshift,internal_stop_codon	875568..875570(-)	875691	WP_003403468.1	Rv0687 family mycofactocin-dependent SDR oxidoreductase	100.0	76.0	80.9
MGA_793	LOCUS_07670	sequence1:893494..894426(-)	partial			WP_200823401.1	alpha/beta hydrolase	72.3	75.7	30.8
MGA_832	LOCUS_08060	sequence1:937153..937797(+)	internal_stop_codon	937795..937797(+),937114..937116(+)		WP_003403262.1	hypothetical protein	100.0	76.7	82.2
MGA_848	LOCUS_08220	sequence1:961712..961969(-)	internal_stop_codon	961979..961981(-)		WP_003898511.1	Mut7-C RNAse domain-containing protein	92.9	31.3	64.6
MGA_849	LOCUS_08230	sequence1:961979..962485(-)	internal_stop_codon	961979..961981(-)		WP_003898511.1	Mut7-C RNAse domain-containing protein	99.4	66.3	80.2
MGA_852	LOCUS_08260	sequence1:966013..968730(+)	frameshift		968960,968962,968848,968529,968977,968860,968861,968542,968864,968866,968547,968482,968550,968551,968553,968875,968878,968110,968562,968953,968956,968957,968959	WP_010950415.1	PE family protein	13.0	9.0	55.9
MGA_854	LOCUS_08270	sequence1:970420..971442(-)	partial			WP_003900174.1	TIGR03086 family metal-binding protein	95.3	74.7	72.2
MGA_860	LOCUS_08330	sequence1:978152..978766(-)	internal_stop_codon	978815..978817(-)		WP_003898561.1	arylsulfatase AtsA	99.0	25.9	51.5
MGA_861	LOCUS_08340	sequence1:978815..980467(-)	internal_stop_codon	978815..978817(-)		WP_011727677.1	sulfatase-like hydrolase/transferase	99.8	70.1	63.0
MGA_865	LOCUS_08380	sequence1:982984..984708(-)	partial			WP_003906700.1	PPE family protein	99.1	62.3	51.5
MGA_869	LOCUS_08410	sequence1:988629..988892(+)	internal_stop_codon	988890..988892(+)		WP_013227534.1	TetR/AcrR family transcriptional regulator	79.3	37.5	46.4
MGA_870	LOCUS_08420	sequence1:988893..989234(+)	internal_stop_codon	988890..988892(+)		WP_013227534.1	TetR/AcrR family transcriptional regulator	87.6	50.5	42.4
MGA_872	LOCUS_08440	sequence1:989959..991683(+)	partial			WP_013399334.1	ABC transporter permease	38.5	24.1	22.0
MGA_876	LOCUS_08480	sequence1:993816..996713(+)	partial			WP_000875575.1	type 2 lanthipeptide synthetase LanM	47.2	44.1	24.6
MGA_882	LOCUS_08540	sequence1:1003973..1005262(+)	frameshift		1005001	WP_010908805.1	SulP family inorganic anion transporter	80.0	69.4	70.1
MGA_883	LOCUS_08550	sequence1:1005144..1005455(+)	frameshift		1005001	WP_010908805.1	SulP family inorganic anion transporter	100.0	21.2	60.0
MGA_900	LOCUS_08720	sequence1:1022271..1022972(+)	partial			WP_010908794.1	hypothetical protein	65.7	73.9	56.2
MGA_905	LOCUS_08770	sequence1:1025969..1026628(+)	internal_stop_codon	1026626..1026628(+)		WP_003402904.1	inorganic phosphate transporter	100.0	52.5	83.1
MGA_906	LOCUS_08780	sequence1:1026629..1027246(+)	frameshift,internal_stop_codon	1026626..1026628(+)	1027210	WP_003911224.1	inorganic phosphate transporter	94.6	45.6	72.2
MGA_913	LOCUS_08850	sequence1:1031781..1033598(-)	partial			WP_003900169.1	hypothetical protein	69.6	74.5	57.1
MGA_928	LOCUS_09000	sequence1:1047454..1048323(-)	frameshift,internal_stop_codon	1048598..1048600(-)	1048321,1048588	WP_003113879.1	APC family permease	97.6	65.0	48.3
MGA_929	LOCUS_09010	sequence1:1048320..1048586(-)	frameshift,internal_stop_codon	1048598..1048600(-)	1048321,1048588	WP_003113879.1	APC family permease	100.0	20.0	61.4
MGA_930	LOCUS_09020	sequence1:1048598..1048903(-)	frameshift,internal_stop_codon	1048598..1048600(-)	1048588	WP_003113879.1	APC family permease	54.5	12.5	54.5
MGA_936	LOCUS_09080	sequence1:1053380..1053730(-)	frameshift		1053734,1054007	WP_003900165.1	amino acid permease	88.8	23.7	65.0
MGA_937	LOCUS_09090	sequence1:1053727..1054008(-)	frameshift		1054010,1053734	WP_003900165.1	amino acid permease	97.8	21.0	74.7
MGA_938	LOCUS_09100	sequence1:1053996..1054703(-)	frameshift		1054010,1053734	WP_003900165.1	amino acid permease	98.7	53.5	81.0
MGA_944	LOCUS_09150	sequence1:1063524..1064486(+)	frameshift,internal_stop_codon	1064485..1064487(+)	1064072,1064097	WP_235624217.1	SGNH hydrolase domain-containing protein	92.8	43.4	63.5
MGA_945	LOCUS_09160	sequence1:1064508..1065686(+)	internal_stop_codon	1064484..1064486(+)		WP_235624217.1	SGNH hydrolase domain-containing protein	97.2	53.1	50.4
MGA_949	LOCUS_09200	sequence1:1070155..1071198(+)	partial			WP_011727218.1	cytochrome P450	93.9	71.6	54.9
MGA_951	LOCUS_09220	sequence1:1072451..1073032(+)	partial			WP_004187737.1	non-ribosomal peptide synthetase	96.4	12.2	28.4
MGA_953	LOCUS_09230	sequence1:1074525..1079285(+)	partial			WP_163682492.1	non-ribosomal peptide synthetase	86.3	24.8	52.9
MGA_960	LOCUS_09300	sequence1:1085758..1086033(-)	frameshift,internal_stop_codon	1085758..1085760(-)	1085742	WP_003402695.1	glutaredoxin family protein	90.1	84.5	78.0
MGA_961	LOCUS_09310	sequence1:1086033..1087694(-)	partial			WP_003911183.1	RND transporter MmpL2	93.7	53.4	84.2
MGA_969	LOCUS_09360	sequence1:1099949..1100416(-)	frameshift		1100484	WP_157890372.1	(2Fe-2S)-binding protein	98.1	71.2	77.0
MGA_971	LOCUS_09380	sequence1:1100739..1101650(+)	frameshift		1100725	WP_003402684.1	HAD-IB family hydrolase	93.1	76.7	85.0
MGA_973	LOCUS_09400	sequence1:1102218..1102523(+)	frameshift		1102505	WP_003402621.1	cyclopropane mycolic acid synthase CmaA2	95.0	31.5	80.2
MGA_974	LOCUS_09410	sequence1:1102520..1103128(+)	frameshift		1102505	WP_010908890.1	cyclopropane mycolic acid synthase family methyltransferase	100.0	66.6	77.6
MGA_1016	LOCUS_09820	sequence1:1146496..1147689(+)	partial			WP_003401488.1	type VII secretion system ESX-3 target PPE4	43.8	33.9	61.5
MGA_1026	LOCUS_09910	sequence1:1158052..1158258(-)	internal_stop_codon	1158052..1158054(-)		WP_003901197.1	MMPL family transporter	100.0	17.1	79.4
MGA_1028	LOCUS_09920	sequence1:1159517..1160251(-)	internal_stop_codon	1160261..1160263(-)		WP_012296533.1	RND family transporter	96.3	23.9	70.2
MGA_1029	LOCUS_09930	sequence1:1160261..1161505(-)	internal_stop_codon	1160261..1160263(-),1161506..1161508(-)		WP_010950409.1	RND transporter MmpL2	99.8	42.7	66.3
MGA_1030	LOCUS_09940	sequence1:1161506..1162111(-)	internal_stop_codon	1161506..1161508(-)		WP_011726756.1	MMPL family transporter	100.0	20.8	64.7
MGA_1049	LOCUS_10130	sequence1:1180542..1180853(+)	frameshift		1180808	WP_003402219.1	oxidoreductase	86.4	28.6	71.9
MGA_1050	LOCUS_10140	sequence1:1180871..1181479(+)	frameshift		1180808	WP_003402219.1	oxidoreductase	100.0	64.6	83.7
MGA_1053	LOCUS_10160	sequence1:1187862..1189118(+)	partial			WP_003402206.1	AAA family ATPase	98.3	56.5	79.6
MGA_1058	LOCUS_10200	sequence1:1195318..1196088(+)	partial			WP_003402206.1	AAA family ATPase	98.8	34.8	92.5
MGA_1073	LOCUS_10350	sequence1:1209983..1212181(-)	frameshift		1212386	WP_013227688.1	SpoIIE family protein phosphatase	61.7	33.1	34.5
MGA_1074	LOCUS_10360	sequence1:1212198..1213880(-)	frameshift,internal_stop_codon	1212416..1212418(-)	1212443,1212413	WP_164929092.1	ATP-binding protein	83.2	37.4	39.3
MGA_1084	LOCUS_10460	sequence1:1221174..1221737(-)	internal_stop_codon	1221174..1221176(-)		WP_011085648.1	adenylate/guanylate cyclase domain-containing protein	100.0	43.4	34.8
MGA_1086	LOCUS_10470	sequence1:1225469..1227544(+)	internal_stop_codon	1227542..1227544(+)		WP_010950855.1	MFS transporter	100.0	65.6	62.5
MGA_1087	LOCUS_10480	sequence1:1227560..1228342(+)	frameshift,internal_stop_codon	1227542..1227544(+)	1228330	WP_003900661.1	MFS transporter	98.8	24.6	66.3
MGA_1088	LOCUS_10490	sequence1:1228339..1228701(+)	frameshift		1228330	WP_010950855.1	MFS transporter	76.7	8.7	56.5
MGA_1106	LOCUS_10660	sequence1:1247632..1248417(-)	frameshift		1248433	WP_003898439.1	phosphate acetyltransferase	99.6	37.7	86.9
MGA_1107	LOCUS_10670	sequence1:1248425..1249255(-)	frameshift,internal_stop_codon	1249292..1249294(-)	1248433	WP_003898439.1	phosphate acetyltransferase	98.9	39.6	75.1
MGA_1108	LOCUS_10680	sequence1:1249292..1249732(-)	internal_stop_codon	1249292..1249294(-)		WP_011727187.1	phosphate acetyltransferase	94.5	19.9	72.5
MGA_1111	LOCUS_10710	sequence1:1251701..1254523(-)	partial			WP_003911169.1	type I polyketide synthase	99.8	67.0	61.4
MGA_1112	LOCUS_10720	sequence1:1254839..1255894(+)	frameshift		1254828	WP_003898435.1	RND transporter MmpL1	98.9	36.2	80.1
MGA_1129	LOCUS_10860	sequence1:1275163..1275369(+)	internal_stop_codon	1275367..1275369(+)		WP_003401851.1	site-2 protease family protein	100.0	26.3	85.3
MGA_1130	LOCUS_10870	sequence1:1275394..1275942(+)	internal_stop_codon	1275367..1275369(+)		WP_003401851.1	site-2 protease family protein	99.5	69.9	70.2
MGA_1151	LOCUS_11070	sequence1:1297138..1298613(-)	internal_stop_codon	1298662..1298664(-)		WP_003900133.1	aerobic carbon-monoxide dehydrogenase large subunit	100.0	61.5	92.9
MGA_1152	LOCUS_11080	sequence1:1298662..1299528(-)	internal_stop_codon	1298662..1298664(-)		WP_011727162.1	aerobic carbon-monoxide dehydrogenase large subunit	100.0	36.4	89.3
MGA_1153	LOCUS_11090	sequence1:1299525..1299689(-)	internal_stop_codon	1299717..1299719(-)		WP_003401867.1	(2Fe-2S)-binding protein	100.0	34.0	81.5
MGA_1154	LOCUS_11100	sequence1:1299717..1300007(-)	internal_stop_codon	1299717..1299719(-)		WP_003401867.1	(2Fe-2S)-binding protein	99.0	59.7	92.6
MGA_1155	LOCUS_11110	sequence1:1300007..1300249(-)	frameshift		1300253	WP_003401869.1	xanthine dehydrogenase family protein subunit M	95.0	26.6	69.7
MGA_1156	LOCUS_11120	sequence1:1300176..1300835(-)	frameshift		1300253	WP_003401869.1	xanthine dehydrogenase family protein subunit M	88.6	69.2	84.8
MGA_1172	LOCUS_11270	sequence1:1315992..1320272(+)	frameshift,internal_stop_codon	1317109..1317111(+),1319941..1319943(+)	1316915,1320134,1317207,1319897,1320135,1319961,1318735	WP_003916655.1	PPE domain-containing protein	96.8	41.8	57.4
MGA_1173	LOCUS_11280	sequence1:1320338..1321816(+)	frameshift		1320134,1321607,1321744,1321747,1321748,1321750,1321751,1321753	WP_003916655.1	PPE domain-containing protein	95.3	15.4	47.5
MGA_1176	LOCUS_11300	sequence1:1327809..1335020(+)	partial			WP_122524938.1	PPE domain-containing protein	90.8	70.4	34.5
MGA_1182	LOCUS_11360	sequence1:1341204..1341581(+)	partial			WP_010886091.1	PE family protein	73.6	15.2	45.7
MGA_1190	LOCUS_11440	sequence1:1347985..1349817(+)	frameshift		1347708	WP_011727124.1	Hsp70 family protein	84.1	83.9	44.9
MGA_1195	LOCUS_11490	sequence1:1354193..1355095(+)	partial			WP_000682177.1	exosporium glycoprotein BclB-related protein	41.0	24.6	38.2
MGA_1196	LOCUS_11500	sequence1:1355213..1356199(-)	frameshift		1355073,1355078,1355239,1355079,1355085,1355251,1355091,1355221,1355064	WP_003901837.1	isoniazid-induced protein IniB	66.2	35.3	43.8
MGA_1201	LOCUS_11540	sequence1:1365800..1368856(-)	internal_stop_codon	1365800..1365802(-)		WP_010950544.1	PE family protein	12.0	24.8	50.8
MGA_1203	LOCUS_11550	sequence1:1370907..1372256(+)	partial			WP_010886128.1	PE family protein	25.2	12.4	54.0
MGA_1204	LOCUS_11560	sequence1:1372438..1373526(+)	frameshift		1373367	WP_003911027.1	PE family protein	32.0	26.4	45.7
MGA_1207	LOCUS_11590	sequence1:1374809..1375105(-)	frameshift		1375103	WP_003401666.1	nuclear transport factor 2 family protein	92.9	73.4	70.3
MGA_1209	LOCUS_11610	sequence1:1376037..1376210(-)	internal_stop_codon	1376250..1376252(-)		WP_003898400.1	UDP-glucose/GDP-mannose dehydrogenase family protein	87.7	11.3	82.0
MGA_1210	LOCUS_11620	sequence1:1376250..1377371(-)	internal_stop_codon	1376250..1376252(-)		WP_003898400.1	UDP-glucose/GDP-mannose dehydrogenase family protein	100.0	84.2	87.7
MGA_1211	LOCUS_11630	sequence1:1377448..1378971(-)	frameshift		1377406	WP_011727115.1	hypothetical protein	64.9	59.4	43.8
MGA_1212	LOCUS_11640	sequence1:1379127..1380677(-)	frameshift		1380791	WP_011727115.1	hypothetical protein	61.4	61.2	40.7
MGA_1216	LOCUS_11680	sequence1:1383044..1383460(-)	partial			WP_012640167.1	DUF1330 domain-containing protein	88.4	74.2	34.4
MGA_1224	LOCUS_11750	sequence1:1390384..1391493(-)	partial			WP_063170440.1	zinc-dependent alcohol dehydrogenase family protein	55.0	62.3	29.4
MGA_1230	LOCUS_11800	sequence1:1395970..1396671(-)	partial			WP_003114574.1	3-dehydroquinate synthase	76.0	47.3	41.8
MGA_1232	LOCUS_11820	sequence1:1398493..1398861(+)	internal_stop_codon	1398859..1398861(+)		WP_011089205.1	alpha/beta hydrolase fold domain-containing protein	86.9	11.8	62.3
MGA_1233	LOCUS_11830	sequence1:1398865..1399281(+)	internal_stop_codon	1399279..1399281(+),1398859..1398861(+)		WP_011089205.1	alpha/beta hydrolase fold domain-containing protein	98.6	15.3	54.0
MGA_1234	LOCUS_11840	sequence1:1399354..1400232(+)	frameshift,internal_stop_codon	1399279..1399281(+)	1400136,1400493	WP_011089205.1	alpha/beta hydrolase fold domain-containing protein	89.4	29.4	58.2
MGA_1235	LOCUS_11850	sequence1:1400154..1400585(+)	frameshift		1400136,1400493	WP_011089205.1	alpha/beta hydrolase fold domain-containing protein	80.4	12.8	64.3
MGA_1236	LOCUS_11860	sequence1:1400525..1401076(+)	frameshift		1400492	WP_011089205.1	alpha/beta hydrolase fold domain-containing protein	94.5	19.2	63.0
MGA_1241	LOCUS_11910	sequence1:1404370..1405839(-)	partial			WP_010886106.1	PE family protein	24.1	25.5	54.2
MGA_1243	LOCUS_11930	sequence1:1407153..1407767(+)	frameshift		1407112	WP_011730628.1	mannitol dehydrogenase family protein	97.1	41.8	65.5
MGA_1252	LOCUS_12010	sequence1:1416422..1417858(-)	partial			WP_011727115.1	hypothetical protein	68.2	59.4	38.4
MGA_1262	LOCUS_12110	sequence1:1425034..1425495(+)	internal_stop_codon	1425493..1425495(+)		WP_003401544.1	sulfatase	92.2	30.3	80.9
MGA_1263	LOCUS_12120	sequence1:1425613..1426431(+)	internal_stop_codon	1425493..1425495(+)		WP_003401544.1	sulfatase	99.6	58.1	70.6
MGA_1277	LOCUS_12260	sequence1:1444001..1444741(-)	internal_stop_codon	1444001..1444003(-)		WP_003401448.1	class I SAM-dependent methyltransferase	100.0	81.8	78.9
MGA_1281	LOCUS_12300	sequence1:1448235..1448606(-)	frameshift		1448572	WP_005079442.1	hypothetical protein	93.5	63.5	62.6
MGA_1282	LOCUS_12310	sequence1:1448806..1450401(+)	internal_stop_codon	1450399..1450401(+)		WP_003401392.1	acyl-CoA dehydrogenase family protein	100.0	72.5	82.8
MGA_1283	LOCUS_12320	sequence1:1450414..1450992(+)	internal_stop_codon	1450399..1450401(+)		WP_003401392.1	acyl-CoA dehydrogenase family protein	100.0	26.8	84.7
MGA_1320	LOCUS_12680	sequence1:1493944..1494831(+)	frameshift		1494753	WP_003401279.1	lipase maturation factor family protein	95.6	58.5	77.7
MGA_1321	LOCUS_12690	sequence1:1494825..1495367(+)	frameshift		1494753	WP_003401279.1	lipase maturation factor family protein	99.4	37.1	81.0
MGA_1322	LOCUS_12700	sequence1:1495449..1497821(-)	partial			WP_010950451.1	PE family protein	15.7	14.9	59.7
MGA_1326	LOCUS_12740	sequence1:1501900..1502139(-)	frameshift		1502194	WP_003401265.1	acyl-CoA dehydrogenase family protein	100.0	13.9	72.2
MGA_1327	LOCUS_12750	sequence1:1502039..1502704(-)	frameshift		1502192,1502723,1502894	WP_003401265.1	acyl-CoA dehydrogenase family protein	76.9	29.9	87.6
MGA_1329	LOCUS_12760	sequence1:1504348..1505097(-)	partial			WP_003401265.1	acyl-CoA dehydrogenase family protein	91.2	40.0	84.1
MGA_1330	LOCUS_12770	sequence1:1505191..1506405(+)	partial			WP_003911027.1	PE family protein	30.9	28.7	59.5
MGA_1331	LOCUS_12780	sequence1:1506448..1507668(-)	partial			WP_004081285.1	DNA polymerase III subunit alpha	40.4	11.9	34.7
MGA_1332	LOCUS_12790	sequence1:1508392..1509132(+)	partial			WP_003899159.1	hypothetical protein	57.7	44.0	65.5
MGA_1335	LOCUS_12820	sequence1:1510286..1511338(+)	partial			WP_003409874.1	hypothetical protein	61.7	71.7	54.5
MGA_1350	LOCUS_12960	sequence1:1525714..1529589(-)	partial			WP_027084589.1	non-ribosomal peptide synthetase	49.9	19.5	33.7
MGA_1364	LOCUS_13090	sequence1:1545665..1546063(+)	partial			WP_013228395.1	CD225/dispanin family protein	47.7	51.2	51.5
MGA_1381	LOCUS_13260	sequence1:1568482..1569648(-)	frameshift,internal_stop_codon	1568481..1568483(-)	1569653	WP_003908489.1	molybdopterin oxidoreductase family protein	100.0	51.6	78.9
MGA_1382	LOCUS_13270	sequence1:1569597..1570718(-)	frameshift		1569653	WP_010886070.1	molybdopterin oxidoreductase family protein	98.7	48.3	79.9
MGA_1384	LOCUS_13290	sequence1:1571488..1572513(-)	partial			WP_003916225.1	L,D-transpeptidase LdtMt4	73.9	68.9	87.3
MGA_1389	LOCUS_13340	sequence1:1576357..1579416(+)	partial			WP_010950666.1	PE family protein	11.4	23.7	54.3
MGA_1390	LOCUS_13350	sequence1:1579653..1580393(-)	partial			WP_003401122.1	beta-glucosidase	100.0	35.6	65.4
MGA_1392	LOCUS_13360	sequence1:1582284..1583300(-)	frameshift		1582529	WP_010950358.1	beta-glucosidase	70.1	34.3	84.8
MGA_1424	LOCUS_13670	sequence1:1615486..1616199(-)	internal_stop_codon	1616272..1616274(-)		WP_014877431.1	cytochrome P450	100.0	57.0	70.9
MGA_1425	LOCUS_13680	sequence1:1616272..1616610(-)	internal_stop_codon	1616272..1616274(-),1616638..1616640(-)		WP_014877431.1	cytochrome P450	100.0	26.9	66.1
MGA_1429	LOCUS_13720	sequence1:1619396..1619752(+)	frameshift		1619749	WP_011728430.1	phosphotransferase	94.9	29.6	58.9
MGA_1430	LOCUS_13730	sequence1:1619809..1620564(+)	frameshift		1619749	WP_011728430.1	phosphotransferase	96.8	62.5	59.0
MGA_1433	LOCUS_13760	sequence1:1622196..1622378(-)	frameshift		1622389	WP_011728746.1	thioesterase family protein	95.0	19.1	82.5
MGA_1444	LOCUS_13860	sequence1:1634565..1635065(+)	internal_stop_codon	1635063..1635065(+)		WP_010950355.1	PE-PPE domain-containing protein	100.0	33.3	43.8
MGA_1445	LOCUS_13870	sequence1:1635090..1636046(+)	internal_stop_codon	1635063..1635065(+)		WP_003911094.1	PE-PPE domain-containing protein	97.5	65.8	52.1
MGA_1453	LOCUS_13950	sequence1:1641665..1642180(+)	internal_stop_codon	1642178..1642180(+)		WP_003401015.1	acyl-CoA dehydrogenase	94.2	40.0	85.1
MGA_1454	LOCUS_13960	sequence1:1642226..1642792(+)	internal_stop_codon	1642178..1642180(+),1642790..1642792(+)		WP_003401015.1	acyl-CoA dehydrogenase	100.0	46.7	89.9
MGA_1455	LOCUS_13970	sequence1:1642908..1643303(+)	internal_stop_codon	1643301..1643303(+)		WP_003401010.1	tyrosine-protein phosphatase PtbB	95.4	46.0	77.5
MGA_1456	LOCUS_13980	sequence1:1643310..1643738(+)	internal_stop_codon	1643301..1643303(+)		WP_010950352.1	tyrosine-protein phosphatase PtbB	99.3	51.1	78.7
MGA_1458	LOCUS_13990	sequence1:1645606..1646124(+)	frameshift,internal_stop_codon	1646123..1646125(+)	1645555	WP_003400998.1	PE-PPE domain-containing protein	100.0	29.3	59.9
MGA_1459	LOCUS_14000	sequence1:1646194..1647120(+)	internal_stop_codon	1646122..1646124(+)		WP_003400998.1	PE-PPE domain-containing protein	99.0	51.9	72.5
MGA_1463	LOCUS_14040	sequence1:1653697..1657581(+)	internal_stop_codon	1657579..1657581(+)		WP_169347939.1	non-ribosomal peptide synthase/polyketide synthase	59.8	11.9	39.9
MGA_1465	LOCUS_14060	sequence1:1657762..1658283(+)	frameshift		1658247	WP_013226632.1	non-ribosomal peptide synthetase	92.5	6.7	41.2
MGA_1466	LOCUS_14070	sequence1:1658301..1659035(+)	frameshift		1659008,1658978,1659011,1658356,1659014,1659017,1659002	WP_169347939.1	non-ribosomal peptide synthase/polyketide synthase	92.2	3.4	34.5
MGA_1467	LOCUS_14080	sequence1:1659001..1663266(+)	frameshift		1659032,1658978,1659011	WP_013224968.1	non-ribosomal peptide synthetase	85.1	17.3	37.2
MGA_1468	LOCUS_14090	sequence1:1663272..1663712(+)	partial			WP_011267336.1	alpha/beta fold hydrolase	95.2	54.0	42.4
MGA_1470	LOCUS_14100	sequence1:1665247..1665540(+)	partial			WP_013229866.1	alpha/beta fold hydrolase	84.5	33.1	40.2
MGA_1473	LOCUS_14130	sequence1:1669792..1671870(-)	partial			WP_003899905.1	serine/threonine protein kinase PknK	76.0	49.6	37.3
MGA_1482	LOCUS_14220	sequence1:1680026..1680664(-)	frameshift,internal_stop_codon	1680665..1680667(-)	1680698	WP_003400961.1	TetR/AcrR family transcriptional regulator	98.6	74.6	68.4
MGA_1493	LOCUS_14330	sequence1:1689489..1689701(+)	partial			WP_003977449.1	TOBE domain-containing protein	92.9	45.3	47.7
MGA_1502	LOCUS_14420	sequence1:1697736..1698428(-)	frameshift		1698430	WP_011727866.1	ferredoxin reductase	100.0	63.6	62.9
MGA_1536	LOCUS_14740	sequence1:1737757..1739067(+)	frameshift		1737677	WP_011730667.1	SMP-30/gluconolactonase/LRE family protein	99.5	81.3	66.4
MGA_1542	LOCUS_14800	sequence1:1743709..1745304(-)	partial			WP_010886066.1	PE family protein	20.3	21.8	63.9
MGA_1558	LOCUS_14950	sequence1:1763063..1763935(-)	partial			WP_003911847.1	phospholipase C	100.0	55.8	75.5
MGA_1562	LOCUS_14980	sequence1:1765338..1766570(-)	frameshift		1765460	WP_013226651.1	cytochrome P450	87.3	80.6	41.2
MGA_1570	LOCUS_15050	sequence1:1774331..1775017(+)	frameshift		1774957,1774975	WP_003417912.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	83.3	57.8	80.0
MGA_1571	LOCUS_15060	sequence1:1775046..1775330(+)	frameshift		1774960,1774975	WP_003417912.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	97.9	28.0	69.6
MGA_1573	LOCUS_15080	sequence1:1777177..1777398(+)	internal_stop_codon	1777396..1777398(+)		WP_003899517.1	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	100.0	18.9	78.1
MGA_1574	LOCUS_15090	sequence1:1777516..1778340(+)	internal_stop_codon	1777396..1777398(+)		WP_036453060.1	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	99.3	71.4	85.7
MGA_1575	LOCUS_15100	sequence1:1778341..1779636(+)	partial			WP_013228930.1	cytochrome P450	68.4	72.7	35.1
MGA_1576	LOCUS_15110	sequence1:1779623..1780018(+)	frameshift		1779910	WP_003896236.1	amidohydrolase family protein	74.8	22.7	82.7
MGA_1578	LOCUS_15120	sequence1:1782122..1782538(+)	partial			WP_003896236.1	amidohydrolase family protein	90.6	29.0	75.2
MGA_1595	LOCUS_15290	sequence1:1804909..1805463(-)	internal_stop_codon	1805479..1805481(-)		WP_010950405.1	siderophore RND transporter MmpL4	94.0	17.6	80.9
MGA_1596	LOCUS_15300	sequence1:1805479..1805979(-)	internal_stop_codon	1805479..1805481(-),1806073..1806075(-)		WP_010908861.1	RND family transporter	99.4	17.2	78.2
MGA_1597	LOCUS_15310	sequence1:1806073..1806489(-)	frameshift,internal_stop_codon	1806072..1806074(-)	1806584	WP_010950405.1	siderophore RND transporter MmpL4	100.0	14.3	76.8
MGA_1598	LOCUS_15320	sequence1:1806489..1807820(-)	frameshift		1806587	WP_003898458.1	siderophore RND transporter MmpL4	91.6	42.0	73.2
MGA_1610	LOCUS_15440	sequence1:1817198..1818805(-)	partial			WP_010950451.1	PE family protein	22.8	14.7	53.3
MGA_1611	LOCUS_15450	sequence1:1818956..1819915(+)	frameshift		1819768	WP_005110593.1	NDMA-dependent alcohol dehydrogenase	85.0	69.8	43.2
MGA_1619	LOCUS_15530	sequence1:1826647..1827120(-)	partial			WP_003400664.1	SRPBCC family protein	98.7	69.2	76.8
MGA_1623	LOCUS_15570	sequence1:1830829..1831992(-)	partial			WP_010920958.1	aromatic ring-hydroxylating dioxygenase subunit alpha	76.2	73.3	26.9
MGA_1628	LOCUS_15620	sequence1:1835405..1835614(-)	frameshift		1835648	WP_003401963.1	hypothetical protein	100.0	32.9	44.3
MGA_1629	LOCUS_15630	sequence1:1835496..1836026(-)	frameshift		1835648	WP_003401963.1	hypothetical protein	68.2	58.2	46.4
MGA_1634	LOCUS_15680	sequence1:1839457..1839780(+)	internal_stop_codon	1839778..1839780(+)		WP_005112233.1	sulfotransferase	79.4	22.7	40.9
MGA_1635	LOCUS_15690	sequence1:1839937..1840671(+)	internal_stop_codon	1839778..1839780(+)		WP_005094688.1	sulfotransferase	92.2	53.3	32.2
MGA_1637	LOCUS_15700	sequence1:1841878..1843116(+)	partial			WP_010920958.1	aromatic ring-hydroxylating dioxygenase subunit alpha	42.0	43.3	36.0
MGA_1638	LOCUS_15710	sequence1:1843781..1846642(+)	partial			WP_013226813.1	aminomethyl-transferring glycine dehydrogenase	46.1	45.8	58.6
MGA_1639	LOCUS_15720	sequence1:1846623..1847291(+)	internal_stop_codon	1847289..1847291(+)		WP_013223708.1	glycine cleavage system aminomethyltransferase GcvT	98.2	59.0	55.0
MGA_1640	LOCUS_15730	sequence1:1847325..1847717(+)	internal_stop_codon	1847289..1847291(+)		WP_013223708.1	glycine cleavage system aminomethyltransferase GcvT	96.9	34.7	54.7
MGA_1651	LOCUS_15830	sequence1:1858548..1858847(-)	partial			WP_003420544.1	lipoprotein LpqH	99.0	61.6	80.6
MGA_1652	LOCUS_15840	sequence1:1859219..1859797(+)	frameshift		1859740	WP_003900750.1	alkyl/aryl-sulfatase	90.6	27.8	89.1
MGA_1653	LOCUS_15850	sequence1:1859794..1861092(+)	frameshift		1859740	WP_003900750.1	alkyl/aryl-sulfatase	100.0	69.0	75.9
MGA_1654	LOCUS_15860	sequence1:1861099..1861860(-)	frameshift		1861894	WP_011730118.1	NADPH:quinone oxidoreductase family protein	98.0	76.2	46.8
MGA_1660	LOCUS_15910	sequence1:1868553..1871666(-)	partial			WP_010886177.1	PE family protein	11.1	20.2	42.9
MGA_1662	LOCUS_15930	sequence1:1872769..1873374(+)	internal_stop_codon	1873372..1873374(+)		WP_003420539.1	phosphotransferase family protein	99.5	57.3	80.6
MGA_1663	LOCUS_15940	sequence1:1873390..1873821(+)	internal_stop_codon	1873372..1873374(+)		WP_003420539.1	phosphotransferase family protein	97.9	39.9	84.3
MGA_1685	LOCUS_16160	sequence1:1886436..1886795(-)	internal_stop_codon	1886436..1886438(-)		WP_005132930.1	NINE protein	57.1	57.6	47.1
MGA_1688	LOCUS_16190	sequence1:1888655..1889440(+)	frameshift		1888565,1888493,1888511	WP_041272198.1	alkyl/aryl-sulfatase	90.0	55.8	31.7
MGA_1694	LOCUS_16250	sequence1:1893366..1896056(-)	partial			WP_011731067.1	non-ribosomal peptide synthetase	98.2	66.8	67.6
MGA_1706	LOCUS_16360	sequence1:1910563..1911681(+)	frameshift		1911603	WP_003420440.1	wax ester/triacylglycerol synthase family O-acyltransferase	91.7	75.1	82.1
MGA_1707	LOCUS_16370	sequence1:1911615..1911989(+)	frameshift		1911609	WP_003420440.1	wax ester/triacylglycerol synthase family O-acyltransferase	100.0	27.3	86.3
MGA_1716	LOCUS_16460	sequence1:1919646..1919858(-)	internal_stop_codon	1919646..1919648(-)		WP_003401485.1	type VII secretion system ESX-3 target PE5	95.7	65.7	44.8
MGA_1719	LOCUS_16490	sequence1:1922938..1923114(+)	frameshift		1922992	WP_003399940.1	type VII secretion system ESX-1 WXG100 family target CFP-10	74.1	43.0	88.4
MGA_1723	LOCUS_16520	sequence1:1926986..1927114(-)	partial			WP_003399963.1	type VII secretion system ESX-1 WXG100 family target ESAT-6	97.6	43.2	90.2
MGA_1725	LOCUS_16530	sequence1:1928586..1929755(-)	frameshift		1929775	WP_003899118.1	PecA family PE domain-processing aspartic protease	12.3	8.6	66.7
MGA_1726	LOCUS_16540	sequence1:1929704..1930087(-)	frameshift		1929778	WP_099318959.1	PE family protein	76.4	21.2	51.5
MGA_1734	LOCUS_16610	sequence1:1937733..1937981(+)	internal_stop_codon	1937979..1937981(+)		WP_010907540.1	lipase LipE	100.0	20.0	84.1
MGA_1735	LOCUS_16620	sequence1:1938054..1938536(+)	internal_stop_codon	1937979..1937981(+)		WP_003420590.1	lipase LipE	95.6	36.9	88.9
MGA_1744	LOCUS_16710	sequence1:1947232..1948587(-)	partial			WP_003113577.1	alpha/beta fold hydrolase	57.4	81.2	33.0
MGA_1748	LOCUS_16740	sequence1:1952406..1953488(+)	frameshift		1953464,1953479	WP_010950597.1	PE family protein	37.5	21.0	60.0
MGA_1750	LOCUS_16760	sequence1:1954281..1954709(-)	partial			WP_003406541.1	amidohydrolase family protein	95.8	54.8	57.4
MGA_1752	LOCUS_16770	sequence1:1957138..1957458(+)	partial			WP_003420612.1	NAD-dependent epimerase/dehydratase family protein	96.2	31.3	75.5
MGA_1769	LOCUS_16930	sequence1:1981599..1985423(+)	frameshift,internal_stop_codon	1981634..1981636(+)	1985187,1985253,1984965,1984362,1985103,1985202,1981810,1983924,1983225,1981780,1985208,1984185,1985211	WP_010886090.1	PE family protein	10.5	15.2	56.7
MGA_1798	LOCUS_17220	sequence1:2019954..2020304(+)	frameshift		2020298	WP_003899719.1	metallopeptidase family protein	99.1	83.9	81.7
MGA_1799	LOCUS_17230	sequence1:2020584..2021075(-)	internal_stop_codon	2021154..2021156(-)		WP_003899720.1	histidine phosphatase family protein	100.0	72.0	72.5
MGA_1803	LOCUS_17270	sequence1:2023190..2024419(+)	partial			WP_235624060.1	LCP family protein	78.7	74.3	65.5
MGA_1806	LOCUS_17300	sequence1:2026005..2026793(-)	partial			WP_003899726.1	DUF4328 domain-containing protein	100.0	72.2	58.4
MGA_1809	LOCUS_17330	sequence1:2029428..2030180(+)	internal_stop_codon	2030178..2030180(+)		WP_010950948.1	TMEM165/GDT1 family protein	90.0	75.2	63.3
MGA_1829	LOCUS_17520	sequence1:2051010..2051186(+)	frameshift		2051064	WP_003399940.1	type VII secretion system ESX-1 WXG100 family target CFP-10	74.1	43.0	86.0
MGA_1832	LOCUS_17540	sequence1:2054617..2055492(+)	frameshift		2054392	WP_003909105.1	type VII secretion system ESX-1 associated protein EspI	99.3	43.4	66.8
MGA_1834	LOCUS_17550	sequence1:2058617..2059453(+)	partial			WP_003901751.1	type VII secretion system ESX-1 associated protein EspJ	83.5	73.9	47.9
MGA_1837	LOCUS_17570	sequence1:2062751..2063362(-)	partial			WP_003400000.1	type VII secretion system ESX-1 subunit EccE1	90.6	37.4	70.1
MGA_1838	LOCUS_17580	sequence1:2063359..2063724(-)	frameshift		2063899	WP_003400004.1	type VII secretion system ESX-1 serine protease mycosin MycP1	78.5	21.3	76.8
MGA_1839	LOCUS_17590	sequence1:2063768..2064763(-)	frameshift		2063899	WP_003400004.1	type VII secretion system ESX-1 serine protease mycosin MycP1	80.7	59.9	83.5
MGA_1840	LOCUS_17600	sequence1:2064954..2065607(-)	partial			WP_003400005.1	type VII secretion system ESX-2 AAA family ATPase EccA2	84.3	29.6	87.4
MGA_1841	LOCUS_17610	sequence1:2065611..2065898(-)	partial			WP_003917259.1	hypothetical protein	100.0	31.5	85.3
MGA_1849	LOCUS_17690	sequence1:2071908..2072396(-)	partial			WP_003899161.1	hypothetical protein	87.7	70.6	45.1
MGA_1852	LOCUS_17720	sequence1:2075306..2075503(-)	frameshift		2075528	WP_003400109.1	hypothetical protein	73.8	28.4	66.7
MGA_1853	LOCUS_17730	sequence1:2075496..2075789(-)	frameshift		2075528	WP_003400109.1	hypothetical protein	96.9	54.4	57.4
MGA_1857	LOCUS_17770	sequence1:2080666..2082468(+)	frameshift		2082411	WP_003902580.1	murein biosynthesis integral membrane protein MurJ	97.2	49.2	76.3
MGA_1858	LOCUS_17780	sequence1:2082498..2084207(+)	frameshift		2082411	WP_003902580.1	murein biosynthesis integral membrane protein MurJ	98.4	47.3	71.8
MGA_1880	LOCUS_18000	sequence1:2108241..2108783(-)	frameshift		2108330,2108165,2108045	WP_011728215.1	MerR family transcriptional regulator	86.1	60.3	81.3
MGA_1894	LOCUS_18140	sequence1:2122987..2123634(+)	partial			WP_048053779.1	type-4 uracil-DNA glycosylase	54.9	59.8	34.7
MGA_1897	LOCUS_18170	sequence1:2125588..2126112(-)	frameshift		2126147	WP_005110025.1	glycine betaine ABC transporter substrate-binding protein	100.0	55.6	74.7
MGA_1898	LOCUS_18180	sequence1:2126133..2126582(-)	frameshift		2126141	WP_011728692.1	glycine betaine ABC transporter substrate-binding protein	79.2	37.2	70.3
MGA_1899	LOCUS_18190	sequence1:2126588..2126869(-)	frameshift		2126934	WP_005110024.1	ABC transporter permease	100.0	35.6	83.9
MGA_1900	LOCUS_18200	sequence1:2126776..2127396(-)	frameshift		2126934	WP_070943583.1	ABC transporter permease	65.0	51.0	67.2
MGA_1908	LOCUS_18280	sequence1:2133853..2134074(-)	partial			WP_003400388.1	transcriptional regulator WhiB5	100.0	53.2	74.3
MGA_1911	LOCUS_18300	sequence1:2136100..2136444(+)	partial			WP_011391058.1	transposase	60.5	44.1	46.4
MGA_1922	LOCUS_18410	sequence1:2142689..2143726(-)	frameshift,internal_stop_codon	2143736..2143738(-)	2143997	WP_003400431.1	MFS transporter	97.1	76.0	75.8
MGA_1923	LOCUS_18420	sequence1:2143736..2143996(-)	frameshift,internal_stop_codon	2143736..2143738(-)	2143997	WP_003400431.1	MFS transporter	100.0	19.5	84.9
MGA_1925	LOCUS_18440	sequence1:2144733..2145263(-)	internal_stop_codon	2145282..2145284(-)		WP_003100363.1	bile acid:sodium symporter	89.8	47.4	42.4
MGA_1926	LOCUS_18450	sequence1:2145282..2145713(-)	internal_stop_codon	2145282..2145284(-)		WP_005095694.1	bile acid:sodium symporter	94.4	40.2	46.7
MGA_1931	LOCUS_18500	sequence1:2151115..2151618(-)	frameshift		2151695	WP_003400476.1	MarR family transcriptional regulator	96.4	77.4	83.9
MGA_1936	LOCUS_18550	sequence1:2155976..2156668(-)	frameshift		2156694	WP_003400489.1	alpha/beta hydrolase	100.0	77.5	80.5
MGA_1937	LOCUS_18560	sequence1:2156665..2156886(-)	frameshift		2156694	WP_003400489.1	alpha/beta hydrolase	82.2	18.8	75.0
MGA_1940	LOCUS_18590	sequence1:2158802..2159794(-)	partial			WP_010950330.1	DUF1707 domain-containing protein	59.7	68.2	77.2
MGA_1956	LOCUS_18750	sequence1:2174387..2175361(-)	frameshift		2175429	WP_003403977.1	MFS transporter	94.4	56.3	54.7
MGA_1957	LOCUS_18760	sequence1:2175427..2175981(-)	frameshift		2175438	WP_003403977.1	MFS transporter	97.8	33.5	65.7
MGA_1961	LOCUS_18800	sequence1:2180747..2181691(+)	internal_stop_codon	2181689..2181691(+)		WP_067456433.1	type I polyketide synthase	100.0	8.2	52.8
MGA_1962	LOCUS_18810	sequence1:2181728..2183905(+)	internal_stop_codon	2181689..2181691(+)		WP_206334115.1	type I polyketide synthase	80.7	11.7	39.8
MGA_1963	LOCUS_18820	sequence1:2183902..2186427(+)	frameshift		2186322,2186319	WP_012296729.1	non-ribosomal peptide synthetase	94.9	22.6	43.7
MGA_1965	LOCUS_18830	sequence1:2188415..2189311(+)	internal_stop_codon	2189309..2189311(+)		WP_009968094.1	non-ribosomal peptide synthetase DhbF	99.7	12.7	31.6
MGA_1967	LOCUS_18850	sequence1:2190107..2191153(+)	frameshift		2191066	WP_003414884.1	p-hydroxybenzoic acid--AMP ligase FadD22	92.2	45.5	69.2
MGA_1968	LOCUS_18860	sequence1:2191081..2191962(+)	frameshift		2191069,2191951	WP_003414884.1	p-hydroxybenzoic acid--AMP ligase FadD22	99.0	41.1	59.5
MGA_1970	LOCUS_18880	sequence1:2192726..2195467(+)	frameshift		2195461	WP_003900387.1	type I polyketide synthase	100.0	42.5	62.4
MGA_1971	LOCUS_18890	sequence1:2195469..2198462(+)	frameshift,internal_stop_codon	2195465..2195467(+)	2195470	WP_003917711.1	type I polyketide synthase	90.9	55.9	59.3
MGA_1973	LOCUS_18910	sequence1:2199636..2201021(+)	partial			WP_012257994.1	AMP-binding protein	56.4	54.2	27.3
MGA_1974	LOCUS_18920	sequence1:2201126..2201389(-)	partial			WP_003892281.1	DUF1707 domain-containing protein	79.3	49.3	36.0
MGA_1978	LOCUS_18960	sequence1:2204944..2205852(+)	frameshift		2204846	WP_189284839.1	LOG family protein	85.8	63.2	37.5
MGA_1979	LOCUS_18970	sequence1:2206278..2207450(+)	frameshift		2206203	WP_003901784.1	FAD-binding oxidoreductase	99.7	81.2	81.0
MGA_1980	LOCUS_18980	sequence1:2207486..2208460(-)	partial			WP_010886125.1	PE domain-containing protein	53.7	17.2	32.8
MGA_1987	LOCUS_19040	sequence1:2214819..2216207(+)	partial			WP_004191694.1	ATP-dependent zinc metalloprotease FtsH	39.0	31.1	35.0
MGA_2002	LOCUS_19190	sequence1:2233857..2234390(+)	frameshift		2233851	WP_005062378.1	CoA pyrophosphatase	100.0	74.4	82.5
MGA_2005	LOCUS_19220	sequence1:2236091..2236636(-)	internal_stop_codon	2236640..2236642(-),2236745..2236747(-)		WP_003896175.1	amidohydrolase family protein	82.9	37.9	37.1
MGA_2006	LOCUS_19230	sequence1:2236745..2237284(-)	internal_stop_codon	2236640..2236642(-),2236745..2236747(-)		WP_011728237.1	amidohydrolase family protein	97.8	42.5	46.3
MGA_2008	LOCUS_19250	sequence1:2239681..2240538(-)	partial			WP_003411868.1	amidohydrolase family protein	76.1	69.7	29.0
MGA_2051	LOCUS_19680	sequence1:2284713..2287106(+)	partial			WP_010950597.1	PE family protein	16.1	19.4	50.0
MGA_2054	LOCUS_19710	sequence1:2289829..2291502(+)	partial			WP_003399879.1	type VII secretion system ESX-1 target PPE68	53.3	80.4	52.6
MGA_2062	LOCUS_19790	sequence1:2299369..2299647(-)	internal_stop_codon	2299660..2299662(-)		WP_011729335.1	hypothetical protein	100.0	27.2	40.4
MGA_2063	LOCUS_19800	sequence1:2299660..2300289(-)	frameshift,internal_stop_codon	2299659..2299661(-)	2300249	WP_011729335.1	hypothetical protein	83.7	46.8	51.4
MGA_2068	LOCUS_19850	sequence1:2303750..2304373(-)	internal_stop_codon	2304410..2304412(-)		WP_011729339.1	hypothetical protein	99.0	35.8	62.4
MGA_2069	LOCUS_19860	sequence1:2304410..2305483(-)	internal_stop_codon	2304410..2304412(-)		WP_011729339.1	hypothetical protein	100.0	61.6	57.4
MGA_2072	LOCUS_19890	sequence1:2306931..2307746(-)	partial			WP_003420421.1	lipid uptake coordinator LucA	59.4	63.4	83.2
MGA_2077	LOCUS_19940	sequence1:2312483..2312725(-)	partial			WP_011729752.1	lipopolysaccharide assembly protein LapA domain-containing protein	61.2	64.5	49.0
MGA_2082	LOCUS_19990	sequence1:2316807..2317250(+)	partial			WP_003420408.1	YbaB/EbfC family nucleoid-associated protein	63.3	69.9	76.3
MGA_2090	LOCUS_20070	sequence1:2324464..2325027(+)	partial			WP_003401153.1	hypothetical protein	86.1	26.2	66.5
MGA_2091	LOCUS_20080	sequence1:2325082..2326017(+)	partial			WP_003401153.1	hypothetical protein	97.4	49.3	79.9
MGA_2092	LOCUS_20090	sequence1:2326024..2328669(-)	frameshift		2328670	WP_003911097.1	ABC transporter ATP-binding protein	97.5	74.5	70.9
MGA_2099	LOCUS_20150	sequence1:2337522..2338877(-)	frameshift		2337584,2337632,2337587,2337623,2337578	WP_009938544.1	PE family protein	26.6	15.4	56.7
MGA_2102	LOCUS_20180	sequence1:2339631..2339978(+)	partial			WP_003419814.1	hypothetical protein	38.3	34.1	54.5
MGA_2111	LOCUS_20270	sequence1:2348567..2349274(-)	frameshift		2349273	WP_003899645.1	hypothetical protein	97.9	45.2	77.8
MGA_2114	LOCUS_20300	sequence1:2351716..2353467(-)	frameshift		2352752,2352550,2352504,2353481,2352845	WP_010950436.1	PE family protein	9.4	6.9	81.8
MGA_2116	LOCUS_20310	sequence1:2354723..2355427(-)	partial			WP_050039320.1	PadR family transcriptional regulator	61.5	76.6	75.0
MGA_2123	LOCUS_20380	sequence1:2361674..2362873(-)	frameshift		2362949	WP_003419768.1	membrane protein	83.2	74.7	65.3
MGA_2127	LOCUS_20420	sequence1:2365331..2366920(-)	internal_stop_codon	2366969..2366971(-)		WP_013225067.1	formate dehydrogenase	99.2	47.8	77.1
MGA_2131	LOCUS_20450	sequence1:2369299..2371194(+)	partial			WP_135359439.1	MFS transporter	70.8	81.0	38.5
MGA_2137	LOCUS_20510	sequence1:2377237..2379465(-)	partial			WP_013227688.1	SpoIIE family protein phosphatase	93.3	51.8	38.2
MGA_2145	LOCUS_20590	sequence1:2383435..2383797(+)	partial			WP_005088224.1	PAS and ANTAR domain-containing protein	77.5	41.2	47.3
MGA_2147	LOCUS_20610	sequence1:2384288..2384530(+)	internal_stop_codon	2384528..2384530(+)		WP_005057245.1	DUF4193 domain-containing protein	96.2	75.0	51.3
MGA_2194	LOCUS_21080	sequence1:2431699..2433273(-)	partial			WP_010886177.1	PE family protein	25.4	22.8	54.9
MGA_2209	LOCUS_21220	sequence1:2447003..2447164(+)	frameshift		2446989	WP_003899605.1	PE family protein	100.0	53.5	69.8
MGA_2211	LOCUS_21240	sequence1:2449202..2449414(-)	frameshift,internal_stop_codon	2449201..2449203(-)	2449497	WP_003899601.1	LLM class flavin-dependent oxidoreductase	98.6	17.5	92.8
MGA_2212	LOCUS_21250	sequence1:2449483..2449653(-)	frameshift,internal_stop_codon	2449201..2449203(-)	2449497	WP_003899601.1	LLM class flavin-dependent oxidoreductase	85.7	12.2	95.8
MGA_2228	LOCUS_21410	sequence1:2465810..2466217(+)	frameshift		2466064	WP_010886067.1	PE family protein	62.2	17.2	67.9
MGA_2229	LOCUS_21420	sequence1:2466120..2467103(+)	frameshift		2466067	WP_010886167.1	PE family protein	15.3	8.5	60.0
MGA_2230	LOCUS_21430	sequence1:2467274..2467489(+)	partial			WP_005065012.1	CbtB-domain containing protein	62.0	64.7	75.0
MGA_2236	LOCUS_21490	sequence1:2473999..2474190(-)	internal_stop_codon	2473999..2474001(-)		WP_003419501.1	mycobilin-forming heme oxygenase MhuD	100.0	60.0	95.2
MGA_2269	LOCUS_21820	sequence1:2503849..2504361(-)	frameshift		2504401	WP_005112261.1	cytochrome c biogenesis CcdA family protein	85.9	51.6	60.3
MGA_2271	LOCUS_21840	sequence1:2504734..2505279(-)	partial			WP_003408271.1	protein disulfide oxidoreductase	74.6	74.2	56.3
MGA_2310	LOCUS_22220	sequence1:2544841..2545452(-)	frameshift		2545573	WP_028175426.1	circularly permuted type 2 ATP-grasp protein	90.1	37.9	50.5
MGA_2319	LOCUS_22310	sequence1:2553822..2554682(-)	internal_stop_codon	2553822..2553824(-)		WP_003899118.1	PecA family PE domain-processing aspartic protease	39.9	21.1	50.0
MGA_2326	LOCUS_22380	sequence1:2561044..2561481(+)	frameshift		2561021	WP_003900084.1	LLM class F420-dependent oxidoreductase	98.6	41.2	86.0
MGA_2335	LOCUS_22470	sequence1:2569992..2572091(-)	frameshift,internal_stop_codon	2571360..2571362(-)	2572227,2569993,2569865,2571862,2572216,2572192,2570402,2572198,2570342,2571816,2570411,2572144,2572210,2572213,2572024,2570425,2570364,2571966,2571583	WP_010886171.1	PE family protein	32.6	17.0	25.1
MGA_2359	LOCUS_22690	sequence1:2599080..2599553(+)	frameshift		2599060,2599053,2599463	WP_011405168.1	ABC transporter permease	75.2	41.8	35.6
MGA_2360	LOCUS_22700	sequence1:2599532..2599783(+)	frameshift		2599466,2599703	WP_003415160.1	ABC transporter permease	74.7	28.3	46.8
MGA_2369	LOCUS_22790	sequence1:2608098..2608481(+)	partial			WP_003418931.1	LppP/LprE family lipoprotein	89.8	51.8	74.6
MGA_2370	LOCUS_22800	sequence1:2608715..2609293(+)	partial			WP_003418925.1	DUF2510 domain-containing protein	99.5	73.5	56.0
MGA_2372	LOCUS_22820	sequence1:2611068..2611511(+)	frameshift		2611466	WP_003418922.1	GAP family protein	90.5	58.5	64.9
MGA_2373	LOCUS_22830	sequence1:2611457..2611717(+)	frameshift		2611466	WP_003418922.1	GAP family protein	93.0	34.9	60.0
MGA_2374	LOCUS_22840	sequence1:2611912..2612133(+)	internal_stop_codon	2612131..2612133(+)		WP_003418777.1	alpha/beta hydrolase	100.0	28.0	83.6
MGA_2375	LOCUS_22850	sequence1:2612149..2612697(+)	internal_stop_codon	2612131..2612133(+)		WP_003418777.1	alpha/beta hydrolase	98.4	68.6	78.8
MGA_2384	LOCUS_22940	sequence1:2619277..2621010(+)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	56.2	55.5	66.2
MGA_2388	LOCUS_22980	sequence1:2625867..2626073(+)	partial			WP_011727573.1	solute carrier family 23 protein	91.2	9.8	82.3
MGA_2399	LOCUS_23080	sequence1:2638341..2639732(-)	partial			WP_003900090.1	PPE family protein	65.0	59.3	53.2
MGA_2405	LOCUS_23140	sequence1:2644243..2644392(-)	partial			WP_003403890.1	ferredoxin	85.7	61.8	85.7
MGA_2408	LOCUS_23170	sequence1:2646583..2647200(-)	internal_stop_codon	2647234..2647236(-)		WP_005110014.1	cytochrome P450	99.5	49.9	74.5
MGA_2409	LOCUS_23180	sequence1:2647234..2647794(-)	internal_stop_codon	2647234..2647236(-)		WP_011730851.1	cytochrome P450	97.3	44.2	75.1
MGA_2410	LOCUS_23190	sequence1:2647804..2648223(-)	frameshift		2648281	WP_003403915.1	TetR/AcrR family transcriptional regulator	89.9	58.7	75.2
MGA_2411	LOCUS_23200	sequence1:2648682..2649812(+)	frameshift		2649779	WP_003403919.1	aldehyde dehydrogenase	98.4	75.7	81.9
MGA_2412	LOCUS_23210	sequence1:2649758..2650147(+)	frameshift		2649779	WP_003403919.1	aldehyde dehydrogenase	97.7	25.8	89.7
MGA_2417	LOCUS_23260	sequence1:2653607..2655157(-)	partial			WP_011729255.1	serine/threonine-protein kinase	61.0	61.7	62.5
MGA_2427	LOCUS_23350	sequence1:2666336..2666656(+)	partial			WP_003401488.1	type VII secretion system ESX-3 target PPE4	93.4	19.5	49.0
MGA_2429	LOCUS_23360	sequence1:2668207..2668572(+)	partial			WP_003899661.1	PPE domain-containing protein	92.6	38.4	39.5
MGA_2438	LOCUS_23450	sequence1:2677572..2678237(-)	internal_stop_codon	2678358..2678360(-)		WP_003403977.1	MFS transporter	97.7	39.4	64.8
MGA_2439	LOCUS_23460	sequence1:2678358..2679191(-)	internal_stop_codon	2678358..2678360(-)		WP_003403977.1	MFS transporter	99.6	51.1	64.9
MGA_2440	LOCUS_23470	sequence1:2679565..2680065(+)	frameshift		2679485	WP_003898589.1	DUF2334 domain-containing protein	100.0	72.8	78.9
MGA_2446	LOCUS_23530	sequence1:2682970..2683491(+)	partial			WP_010886087.1	hypothetical protein	99.4	53.9	76.7
MGA_2449	LOCUS_23550	sequence1:2685642..2686100(-)	frameshift		2685719	WP_005095821.1	PPE family protein	88.2	27.2	52.6
MGA_2453	LOCUS_23590	sequence1:2687576..2687815(-)	frameshift,internal_stop_codon	2687576..2687578(-)	2687858	WP_003403998.1	hypothetical protein	96.2	37.7	65.8
MGA_2460	LOCUS_23660	sequence1:2693629..2693856(+)	frameshift		2693808	WP_003898592.1	VOC family protein	81.3	53.0	78.7
MGA_2461	LOCUS_23670	sequence1:2693819..2693977(+)	frameshift		2693808	WP_003898592.1	VOC family protein	100.0	45.2	71.2
MGA_2473	LOCUS_23780	sequence1:2706418..2706597(-)	partial			WP_003404135.1	DUF3073 domain-containing protein	66.1	65.0	92.3
MGA_2476	LOCUS_23810	sequence1:2708481..2709983(-)	frameshift		2709999	WP_009935691.1	copper-translocating P-type ATPase	99.8	64.8	84.6
MGA_2477	LOCUS_23820	sequence1:2709952..2710884(-)	frameshift		2710002	WP_009935691.1	copper-translocating P-type ATPase	87.7	34.0	55.7
MGA_2484	LOCUS_23890	sequence1:2715411..2715995(-)	frameshift		2716033	WP_003898596.1	FABP family protein	99.5	85.0	85.0
MGA_2489	LOCUS_23940	sequence1:2719619..2720170(+)	partial			WP_003903189.1	response regulator transcription factor	99.5	71.4	87.9
MGA_2492	LOCUS_23970	sequence1:2722429..2723229(+)	frameshift		2723022	WP_011730785.1	phosphate ABC transporter permease subunit PstC	74.1	56.1	69.0
MGA_2493	LOCUS_23980	sequence1:2723162..2723461(+)	frameshift		2723025	WP_011730785.1	phosphate ABC transporter permease subunit PstC	97.0	27.4	62.5
MGA_2497	LOCUS_24020	sequence1:2725923..2727062(-)	internal_stop_codon	2727063..2727065(-)		WP_003898600.1	LCP family protein	100.0	55.3	81.0
MGA_2498	LOCUS_24030	sequence1:2727063..2727368(-)	internal_stop_codon	2727063..2727065(-),2727405..2727407(-)		WP_003404316.1	LCP family protein	100.0	14.8	87.1
MGA_2499	LOCUS_24040	sequence1:2727405..2727959(-)	internal_stop_codon	2727405..2727407(-)		WP_003898600.1	LCP family protein	77.7	19.6	44.5
MGA_2518	LOCUS_24220	sequence1:2747917..2749131(-)	partial			WP_013225697.1	amidohydrolase family protein	71.8	72.9	31.1
MGA_2521	LOCUS_24250	sequence1:2749945..2750883(-)	partial			WP_013530979.1	SDR family NAD(P)-dependent oxidoreductase	66.7	69.8	38.2
MGA_2522	LOCUS_24260	sequence1:2751071..2751505(+)	frameshift,internal_stop_codon	2751504..2751506(+)	2751047	WP_010918753.1	AAA family ATPase	99.3	69.9	55.2
MGA_2523	LOCUS_24270	sequence1:2751821..2752063(+)	partial			WP_003411082.1	hypothetical protein	67.5	80.6	46.3
MGA_2524	LOCUS_24280	sequence1:2752107..2753015(+)	frameshift		2752931	WP_010908259.1	amino acid permease	85.8	51.3	73.4
MGA_2525	LOCUS_24290	sequence1:2753012..2753410(+)	frameshift		2753381,2752934	WP_005111414.1	amino acid permease	93.9	25.1	67.7
MGA_2526	LOCUS_24300	sequence1:2753410..2753589(+)	frameshift		2753380	WP_003899182.1	amino acid permease	89.8	10.8	58.5
MGA_2537	LOCUS_24410	sequence1:2762453..2763331(-)	frameshift		2762451,2762479	WP_013225925.1	polyprenyl synthetase family protein	91.4	72.5	56.3
MGA_2542	LOCUS_24460	sequence1:2766122..2766775(+)	frameshift		2766098	WP_003898609.1	M15 family metallopeptidase	90.3	76.6	78.6
MGA_2556	LOCUS_24600	sequence1:2779479..2779709(+)	frameshift		2779685	WP_003408807.1	type VII secretion system ESX-5 target PE19	90.8	69.7	65.2
MGA_2559	LOCUS_24630	sequence1:2782716..2783378(+)	frameshift		2783312	WP_003898611.1	sensor histidine kinase	81.8	43.1	53.6
MGA_2560	LOCUS_24640	sequence1:2783327..2784109(+)	frameshift		2783312	WP_003898611.1	sensor histidine kinase	85.8	52.5	77.6
MGA_2569	LOCUS_24730	sequence1:2792033..2792653(+)	frameshift		2792527	WP_011730144.1	FAD-binding protein	72.8	25.6	74.7
MGA_2570	LOCUS_24740	sequence1:2792628..2793788(+)	frameshift		2792530	WP_011730144.1	FAD-binding protein	95.6	62.9	75.9
MGA_2571	LOCUS_24750	sequence1:2793791..2794225(+)	frameshift		2794195	WP_011730143.1	LLM class flavin-dependent oxidoreductase	93.8	31.0	83.0
MGA_2572	LOCUS_24760	sequence1:2794222..2795091(+)	frameshift		2794195	WP_011730143.1	LLM class flavin-dependent oxidoreductase	100.0	66.3	81.0
MGA_2574	LOCUS_24780	sequence1:2795941..2796597(+)	internal_stop_codon	2796595..2796597(+)		WP_014878166.1	cyclase family protein	99.5	65.4	75.1
MGA_2575	LOCUS_24790	sequence1:2796613..2796930(+)	internal_stop_codon	2796595..2796597(+)		WP_014878166.1	cyclase family protein	94.3	30.4	80.2
MGA_2593	LOCUS_24970	sequence1:2815237..2815455(-)	frameshift		2815477	WP_011730130.1	mycofactocin-coupled SDR family oxidoreductase	100.0	25.6	88.9
MGA_2606	LOCUS_25100	sequence1:2829019..2829396(+)	frameshift		2829288	WP_014878160.1	acyl-CoA dehydrogenase family protein	72.0	22.7	83.3
MGA_2607	LOCUS_25110	sequence1:2829303..2830184(+)	frameshift		2829288	WP_014878160.1	acyl-CoA dehydrogenase family protein	100.0	76.0	78.1
MGA_2610	LOCUS_25140	sequence1:2832226..2832648(+)	frameshift		2832211	WP_011730120.1	hypothetical protein	100.0	83.2	45.4
MGA_2623	LOCUS_25260	sequence1:2843557..2843802(-)	frameshift,internal_stop_codon	2843467..2843469(-)	2843628	WP_011730101.1	Rieske (2Fe-2S) protein	64.2	40.0	94.2
MGA_2626	LOCUS_25290	sequence1:2846394..2846861(-)	partial			WP_003409199.1	DUF4189 domain-containing protein	59.4	63.6	51.1
MGA_2635	LOCUS_25380	sequence1:2855203..2855904(+)	internal_stop_codon	2855902..2855904(+)		WP_011730094.1	aldehyde dehydrogenase family protein	90.6	43.1	70.6
MGA_2636	LOCUS_25390	sequence1:2855914..2856747(+)	internal_stop_codon	2855902..2855904(+)		WP_011730094.1	aldehyde dehydrogenase family protein	96.0	54.1	75.9
MGA_2641	LOCUS_25440	sequence1:2861159..2861674(+)	internal_stop_codon	2861672..2861674(+)		WP_011730088.1	MCE family protein	100.0	50.1	67.3
MGA_2642	LOCUS_25450	sequence1:2861741..2862190(+)	internal_stop_codon	2861672..2861674(+)		WP_011730088.1	MCE family protein	96.6	42.2	63.9
MGA_2645	LOCUS_25480	sequence1:2864746..2865948(+)	partial			WP_011730084.1	MCE family protein	88.2	73.6	63.2
MGA_2646	LOCUS_25490	sequence1:2865949..2866782(+)	frameshift		2866758	WP_011730083.1	MlaD family protein	97.5	46.9	65.2
MGA_2647	LOCUS_25500	sequence1:2866779..2867396(+)	frameshift		2866758	WP_011728632.1	MlaD family protein	91.2	37.6	64.4
MGA_2649	LOCUS_25520	sequence1:2868220..2868750(-)	partial			WP_003407152.1	membrane protein	90.9	72.3	54.4
MGA_2650	LOCUS_25530	sequence1:2868747..2869424(-)	partial			WP_003407157.1	membrane protein	81.3	70.1	42.1
MGA_2652	LOCUS_25550	sequence1:2870019..2870309(-)	partial			WP_003417257.1	pilin structural subunit Mtp	80.2	71.8	54.5
MGA_2663	LOCUS_25660	sequence1:2877677..2878648(+)	frameshift		2877672	WP_003896175.1	amidohydrolase family protein	99.4	80.8	75.4
MGA_2666	LOCUS_25690	sequence1:2881338..2881931(+)	partial			WP_003407152.1	membrane protein	68.0	60.9	63.4
MGA_2687	LOCUS_25900	sequence1:2901765..2902724(-)	partial			WP_003900223.1	resuscitation-promoting factor protein RpfA	54.2	41.0	70.7
MGA_2700	LOCUS_26030	sequence1:2913872..2914159(+)	partial			WP_003404606.1	MarR family transcriptional regulator	100.0	66.4	88.4
MGA_2702	LOCUS_26050	sequence1:2914992..2915279(+)	partial			WP_003404614.1	DUF2537 domain-containing protein	74.7	75.5	60.6
MGA_2711	LOCUS_26130	sequence1:2927551..2928672(+)	partial			WP_003404651.1	NAD(P)/FAD-dependent oxidoreductase	99.2	74.7	70.3
MGA_2713	LOCUS_26150	sequence1:2930360..2930695(-)	frameshift		2930715	WP_003900230.1	NAD(P)/FAD-dependent oxidoreductase	100.0	20.7	80.2
MGA_2714	LOCUS_26160	sequence1:2930680..2931933(-)	frameshift		2930715	WP_003900230.1	NAD(P)/FAD-dependent oxidoreductase	96.2	76.1	71.5
MGA_2721	LOCUS_26230	sequence1:2936451..2937149(-)	frameshift		2937171	WP_011031577.1	FAD-binding dehydrogenase	94.8	39.5	71.8
MGA_2724	LOCUS_26260	sequence1:2938221..2938412(+)	frameshift		2938382	WP_047314267.1	TetR/AcrR family transcriptional regulator	79.4	24.9	84.0
MGA_2725	LOCUS_26270	sequence1:2938357..2938833(+)	frameshift		2938382	WP_047314267.1	TetR/AcrR family transcriptional regulator	94.9	73.1	72.7
MGA_2726	LOCUS_26280	sequence1:2938892..2939377(-)	partial			WP_003901259.1	sterol desaturase family protein	91.3	49.0	77.6
MGA_2730	LOCUS_26310	sequence1:2943947..2945392(-)	partial			WP_010950932.1	MFS transporter	95.2	43.1	35.0
MGA_2736	LOCUS_26360	sequence1:2957892..2958062(+)	frameshift		2957811,2957823	WP_122524938.1	PPE domain-containing protein	66.1	1.1	73.0
MGA_2738	LOCUS_26370	sequence1:2958800..2959663(+)	partial			WP_003906336.1	PPE family protein	96.9	11.1	36.3
MGA_2742	LOCUS_26410	sequence1:2962115..2962708(+)	internal_stop_codon	2961974..2961976(+)		WP_003404735.1	VOC family protein	100.0	76.7	69.5
MGA_2749	LOCUS_26480	sequence1:2968611..2969414(-)	partial			WP_005110186.1	hypothetical protein	74.9	73.7	29.6
MGA_2753	LOCUS_26520	sequence1:2973163..2974455(+)	partial			WP_003401347.1	PPE family protein	47.7	36.3	48.8
MGA_2754	LOCUS_26530	sequence1:2974723..2975226(+)	partial			WP_005086416.1	hypothetical protein	65.9	76.4	43.2
MGA_2757	LOCUS_26560	sequence1:2976221..2978071(+)	frameshift,internal_stop_codon	2978027..2978029(+),2978051..2978053(+),2977778..2977780(+),2978081..2978083(+)	2977792,2977795,2977798,2977801,2978059,2978062,2978065,2978002,2976081,2978068,2978074,2978143,2977765,2976230,2978221,2978350,2978356	WP_010886165.1	PE family protein	22.2	9.0	52.2
MGA_2767	LOCUS_26660	sequence1:2985654..2985836(-)	frameshift		2986021	WP_003404767.1	hypothetical protein	88.3	14.8	81.1
MGA_2768	LOCUS_26670	sequence1:2985821..2986741(-)	frameshift		2986024	WP_003404767.1	hypothetical protein	80.7	69.0	87.0
MGA_2773	LOCUS_26720	sequence1:2990918..2991526(-)	frameshift		2990985,2991606	WP_003404782.1	serine/threonine protein kinase PknD	89.6	27.3	68.0
MGA_2774	LOCUS_26730	sequence1:2991526..2992890(-)	frameshift		2991606	WP_003404782.1	serine/threonine protein kinase PknD	90.3	57.2	66.3
MGA_2780	LOCUS_26790	sequence1:3000580..3002088(-)	partial			WP_010950464.1	PE family protein	28.7	23.8	55.2
MGA_2787	LOCUS_26860	sequence1:3007658..3008563(-)	partial			WP_011730613.1	diiron oxygenase	100.0	73.1	72.8
MGA_2789	LOCUS_26880	sequence1:3009642..3011348(+)	partial			WP_010950464.1	PE family protein	20.2	18.9	56.5
MGA_2790	LOCUS_26890	sequence1:3011424..3013133(+)	internal_stop_codon	3011346..3011348(+)		WP_099318959.1	PE family protein	21.8	27.1	58.9
MGA_2791	LOCUS_26900	sequence1:3013252..3014313(+)	partial			WP_099318959.1	PE family protein	37.1	28.6	56.5
MGA_2792	LOCUS_26910	sequence1:3014361..3014564(+)	frameshift,internal_stop_codon	3014598..3014600(+)	3014525	WP_005082947.1	Fpg/Nei family DNA glycosylase	95.5	22.3	73.4
MGA_2793	LOCUS_26920	sequence1:3014624..3015223(+)	frameshift,internal_stop_codon	3014598..3014600(+)	3014525	WP_011730610.1	Fpg/Nei family DNA glycosylase	100.0	68.1	81.9
MGA_2797	LOCUS_26960	sequence1:3018902..3019174(-)	partial			WP_003404838.1	chorismate mutase	86.7	74.3	75.6
MGA_2800	LOCUS_26980	sequence1:3025694..3025996(-)	frameshift,internal_stop_codon	3026114..3026116(-)	3026056,3026134	WP_011730597.1	hypothetical protein	97.0	42.7	55.7
MGA_2805	LOCUS_27030	sequence1:3029795..3030883(-)	partial			WP_010886177.1	PE family protein	36.2	22.4	58.8
MGA_2837	LOCUS_27350	sequence1:3067161..3068282(+)	partial			WP_008767823.1	glycosyltransferase family 4 protein	37.3	34.7	32.1
MGA_2838	LOCUS_27360	sequence1:3068376..3069137(+)	partial			WP_033448326.1	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	45.1	45.2	41.4
MGA_2844	LOCUS_27420	sequence1:3074986..3075936(+)	partial			WP_082769289.1	class I SAM-dependent methyltransferase	78.2	74.6	52.6
MGA_2846	LOCUS_27440	sequence1:3077114..3078994(-)	partial			WP_005094336.1	glycosyltransferase family 2 protein	31.0	66.6	31.7
MGA_2849	LOCUS_27470	sequence1:3082003..3083049(-)	partial			WP_012257358.1	WecB/TagA/CpsF family glycosyltransferase	47.7	32.9	38.6
MGA_2857	LOCUS_27550	sequence1:3089151..3089732(+)	internal_stop_codon	3089049..3089051(+)		WP_003405165.1	DUF5642 family protein	99.0	75.8	72.3
MGA_2862	LOCUS_27600	sequence1:3094083..3095210(-)	internal_stop_codon	3095313..3095315(-)		WP_003910253.1	hypothetical protein	69.6	63.7	35.5
MGA_2874	LOCUS_27720	sequence1:3109915..3111426(-)	partial			WP_010886177.1	PE family protein	25.6	20.9	47.3
MGA_2891	LOCUS_27890	sequence1:3129272..3129565(+)	partial			WP_005110193.1	hypothetical protein	78.4	74.0	55.8
MGA_2899	LOCUS_27970	sequence1:3136519..3137973(+)	partial			WP_164922023.1	adenylate/guanylate cyclase domain-containing protein	78.5	68.3	29.8
MGA_2903	LOCUS_28010	sequence1:3140341..3140520(-)	internal_stop_codon	3140341..3140343(-)		WP_011726768.1	IS1380-like element ISMsm3 family transposase	83.1	10.5	79.6
MGA_2912	LOCUS_28080	sequence1:3150388..3151725(+)	partial			WP_010908861.1	RND family transporter	98.9	45.9	75.0
MGA_2924	LOCUS_28200	sequence1:3165076..3165561(+)	internal_stop_codon	3165559..3165561(+)		WP_011729097.1	hypothetical protein	100.0	61.9	58.4
MGA_2925	LOCUS_28210	sequence1:3165574..3165852(+)	internal_stop_codon	3165559..3165561(+)		WP_011729097.1	hypothetical protein	95.7	33.8	77.3
MGA_2927	LOCUS_28230	sequence1:3166059..3167498(+)	partial			WP_011388984.1	esterase-like activity of phytase family protein	74.7	83.1	29.9
MGA_2932	LOCUS_28280	sequence1:3172412..3173302(+)	internal_stop_codon	3173300..3173302(+)		WP_003405629.1	hypothetical protein	100.0	83.6	88.5
MGA_2933	LOCUS_28290	sequence1:3173315..3173470(+)	internal_stop_codon	3173300..3173302(+)		WP_003405629.1	hypothetical protein	98.0	14.1	90.0
MGA_2938	LOCUS_28330	sequence1:3179046..3180914(+)	frameshift		3180480,3180833,3180834,3180900,3180908,3180972,3180909,3180973,3180976,3179919,3180888,3180921,3180890,3180446	WP_010950451.1	PE family protein	19.3	14.3	50.0
MGA_2949	LOCUS_28430	sequence1:3187078..3188418(-)	frameshift		3187971,3187859,3187637,3187659,3187629	WP_010950436.1	PE family protein	14.3	8.0	76.6
MGA_2953	LOCUS_28450	sequence1:3192692..3194023(-)	frameshift,internal_stop_codon	3194044..3194046(-)	3194163	WP_003405708.1	alpha/beta-hydrolase family protein	100.0	75.5	82.4
MGA_2961	LOCUS_28530	sequence1:3202772..3203575(+)	frameshift		3202752,3202755	WP_003405732.1	RDD family protein	62.2	69.2	83.1
MGA_2985	LOCUS_28770	sequence1:3226616..3227197(+)	frameshift		3226533	WP_003405815.1	DUF4245 domain-containing protein	99.5	82.4	76.0
MGA_2987	LOCUS_28790	sequence1:3228019..3228951(-)	partial			WP_003898727.1	AI-2E family transporter	82.3	66.2	83.5
MGA_2990	LOCUS_28810	sequence1:3232889..3234454(-)	partial			WP_003911027.1	PE family protein	22.6	26.9	60.2
MGA_3000	LOCUS_28910	sequence1:3243371..3243874(+)	frameshift		3243742	WP_010950951.1	type VII secretion system ESX-1 associated protein EspJ	74.3	44.6	49.6
MGA_3002	LOCUS_28930	sequence1:3244168..3244998(-)	frameshift		3245089	WP_010950952.1	type VII secretion system ESX-1 associated protein EspK	95.3	35.2	59.3
MGA_3005	LOCUS_28950	sequence1:3247280..3247594(-)	partial			WP_010950952.1	type VII secretion system ESX-1 associated protein EspK	93.3	13.0	66.0
MGA_3009	LOCUS_28980	sequence1:3250929..3251198(-)	partial			WP_003399988.1	type VII secretion system ESX-1 associated protein EspL	77.5	60.0	60.9
MGA_3010	LOCUS_28990	sequence1:3251195..3252199(-)	partial			WP_003399995.1	type VII secretion system ESX-1 target EspB	99.1	72.0	37.2
MGA_3013	LOCUS_29010	sequence1:3254704..3255075(+)	frameshift,internal_stop_codon	3255085..3255087(+),3255073..3255075(+)	3255096	WP_003898733.1	hypothetical protein	100.0	53.0	79.7
MGA_3016	LOCUS_29040	sequence1:3256543..3257244(-)	frameshift		3257249	WP_003898734.1	hypothetical protein	98.7	80.8	77.9
MGA_3019	LOCUS_29070	sequence1:3258812..3260011(+)	frameshift		3259718,3258782	WP_003898735.1	glucose-6-phosphate dehydrogenase	75.7	64.8	83.1
MGA_3023	LOCUS_29110	sequence1:3262345..3262932(-)	partial			WP_010908039.1	TetR/AcrR family transcriptional regulator	45.6	61.3	59.6
MGA_3034	LOCUS_29220	sequence1:3274674..3275852(-)	partial			WP_005064806.1	TetR/AcrR family transcriptional regulator	32.7	56.9	32.4
MGA_3037	LOCUS_29240	sequence1:3280941..3281555(+)	partial			WP_030568499.1	IS110 family transposase	98.0	48.1	44.5
MGA_3040	LOCUS_29260	sequence1:3286391..3286708(+)	partial			WP_010950605.1	PPE family protein	89.5	14.2	47.9
MGA_3041	LOCUS_29270	sequence1:3286774..3288678(-)	partial			WP_003405919.1	PPE family protein	69.1	70.9	56.8
MGA_3066	LOCUS_29500	sequence1:3318856..3319128(-)	frameshift		3319147	WP_003898744.1	class I SAM-dependent methyltransferase	98.9	31.6	73.0
MGA_3067	LOCUS_29510	sequence1:3319118..3319693(-)	frameshift		3319147	WP_003898744.1	class I SAM-dependent methyltransferase	91.6	62.1	81.7
MGA_3068	LOCUS_29520	sequence1:3319708..3320223(-)	frameshift		3320256,3320275,3320223	WP_009936776.1	DUF1697 domain-containing protein	100.0	82.6	73.3
MGA_3076	LOCUS_29580	sequence1:3328076..3328552(+)	partial			WP_003406064.1	HhH-GPD-type base excision DNA repair protein	91.8	74.4	86.9
MGA_3078	LOCUS_29600	sequence1:3328755..3329141(-)	partial			WP_003406066.1	hypothetical protein	100.0	34.5	86.7
MGA_3087	LOCUS_29680	sequence1:3337358..3339559(+)	partial			WP_010950373.1	PE family protein	78.6	68.8	29.7
MGA_3088	LOCUS_29690	sequence1:3339747..3340877(+)	partial			WP_010886133.1	PE family protein	26.9	20.3	50.5
MGA_3091	LOCUS_29720	sequence1:3342811..3343170(+)	internal_stop_codon	3342727..3342729(+)		WP_003406163.1	hypothetical protein	96.6	78.8	72.2
MGA_3094	LOCUS_29750	sequence1:3347533..3347721(+)	internal_stop_codon	3347719..3347721(+)		WP_010950464.1	PE family protein	95.2	9.7	57.6
MGA_3102	LOCUS_29830	sequence1:3358292..3358819(+)	frameshift		3358738	WP_013531929.1	FAD-dependent monooxygenase	97.1	33.5	62.9
MGA_3103	LOCUS_29840	sequence1:3358834..3359802(+)	frameshift		3358741	WP_013531929.1	FAD-dependent monooxygenase	92.2	60.4	69.7
MGA_3105	LOCUS_29860	sequence1:3360615..3361829(-)	frameshift		3360650,3360659,3360662	WP_003911027.1	PE family protein	35.1	31.0	53.5
MGA_3110	LOCUS_29900	sequence1:3367344..3367616(-)	frameshift		3367638	WP_003417776.1	roadblock/LC7 domain-containing protein	80.0	55.4	84.7
MGA_3114	LOCUS_29940	sequence1:3372040..3373854(+)	frameshift		3373227,3373252,3373852	WP_010886116.1	PE family protein	20.2	24.8	53.3
MGA_3119	LOCUS_29980	sequence1:3379077..3379937(-)	frameshift		3379962	WP_003899661.1	PPE domain-containing protein	52.8	45.1	24.5
MGA_3122	LOCUS_30000	sequence1:3383076..3383420(-)	partial			WP_165447243.1	nitrate/nitrite transporter	87.7	21.7	51.5
MGA_3127	LOCUS_30040	sequence1:3388604..3389470(-)	frameshift		3389529,3388773	WP_003408545.1	ATP transporter ATP-binding protein/permease	79.9	26.6	63.9
MGA_3128	LOCUS_30050	sequence1:3389398..3391266(-)	frameshift		3389529	WP_003408545.1	ATP transporter ATP-binding protein/permease	91.6	64.9	66.7
MGA_3137	LOCUS_30140	sequence1:3406605..3407033(-)	partial			WP_005084922.1	heme-binding protein	62.7	80.9	62.9
MGA_3141	LOCUS_30180	sequence1:3410638..3410985(+)	frameshift		3410955	WP_003417452.1	NADP-dependent isocitrate dehydrogenase	99.1	27.9	85.1
MGA_3142	LOCUS_30190	sequence1:3410919..3411863(+)	frameshift		3410955	WP_003417452.1	NADP-dependent isocitrate dehydrogenase	96.2	73.8	89.7
MGA_3153	LOCUS_30300	sequence1:3422471..3424651(-)	frameshift,internal_stop_codon	3422257..3422259(-)	3422259,3422253	WP_010886084.1	PE family protein	17.4	16.1	50.0
MGA_3157	LOCUS_30330	sequence1:3429136..3429735(-)	partial			WP_003905037.1	IS110 family transposase	97.5	34.0	81.4
MGA_3159	LOCUS_30350	sequence1:3430495..3433977(+)	partial			WP_010886152.1	PE family protein	12.8	27.8	59.6
MGA_3194	LOCUS_30680	sequence1:3475968..3476228(+)	internal_stop_codon	3476226..3476228(+)		WP_003891444.1	magnesium transporter CorA family protein	93.0	24.0	57.5
MGA_3195	LOCUS_30690	sequence1:3476238..3476966(+)	internal_stop_codon	3476226..3476228(+)		WP_003891444.1	magnesium transporter CorA family protein	97.9	72.8	68.7
MGA_3196	LOCUS_30700	sequence1:3477171..3477923(+)	internal_stop_codon	3477921..3477923(+)		WP_003417215.1	RluA family pseudouridine synthase	97.2	79.7	80.7
MGA_3200	LOCUS_30740	sequence1:3482664..3483893(+)	partial			WP_003404747.1	PPE family protein	56.5	57.7	38.0
MGA_3203	LOCUS_30770	sequence1:3485646..3487337(-)	internal_stop_codon	3487338..3487340(-)		WP_010950866.1	ATP-dependent helicase	100.0	36.3	76.7
MGA_3204	LOCUS_30780	sequence1:3487338..3490265(-)	internal_stop_codon	3487338..3487340(-)		WP_003912132.1	ATP-dependent helicase	99.0	63.3	82.5
MGA_3211	LOCUS_30850	sequence1:3496343..3496654(+)	partial			WP_003417162.1	protein UsfY	99.0	74.5	81.4
MGA_3215	LOCUS_30890	sequence1:3499619..3501910(+)	partial			WP_004530004.1	AMP-binding protein	48.2	29.0	30.2
MGA_3216	LOCUS_30900	sequence1:3501816..3509084(+)	frameshift		3501760	WP_011267345.1	non-ribosomal peptide synthetase	73.3	65.5	30.2
MGA_3221	LOCUS_30950	sequence1:3513018..3513338(-)	partial			WP_003900000.1	acyl-CoA carboxylase subunit epsilon	99.1	71.2	54.1
MGA_3225	LOCUS_30990	sequence1:3516492..3517175(-)	frameshift,internal_stop_codon	3517181..3517183(-)	3517231	WP_003899998.1	GtrA family protein	100.0	82.0	82.3
MGA_3235	LOCUS_31090	sequence1:3528310..3528768(+)	internal_stop_codon	3528766..3528768(+)		WP_003898774.1	CocE/NonD family hydrolase	97.4	26.4	50.7
MGA_3236	LOCUS_31100	sequence1:3528835..3530016(+)	internal_stop_codon	3528766..3528768(+)		WP_003898774.1	CocE/NonD family hydrolase	97.5	67.9	56.7
MGA_3255	LOCUS_31280	sequence1:3549145..3549942(-)	frameshift		3550058	WP_003899988.1	hypothetical protein	100.0	55.9	77.0
MGA_3256	LOCUS_31290	sequence1:3549978..3550553(-)	frameshift		3550064	WP_003899988.1	hypothetical protein	82.2	33.1	77.1
MGA_3264	LOCUS_31370	sequence1:3558019..3559707(+)	partial			WP_010950732.1	PecA family PE domain-processing aspartic protease	60.3	68.1	46.0
MGA_3266	LOCUS_31380	sequence1:3560887..3561849(+)	partial			WP_003906993.1	PPE family protein	98.8	56.4	43.0
MGA_3268	LOCUS_31390	sequence1:3563267..3564058(+)	internal_stop_codon	3564056..3564058(+)		WP_010886120.1	PPE family protein	99.2	37.2	47.6
MGA_3277	LOCUS_31480	sequence1:3574700..3575314(+)	internal_stop_codon	3575312..3575314(+)		WP_003900661.1	MFS transporter	86.8	16.9	72.3
MGA_3278	LOCUS_31490	sequence1:3575318..3577930(+)	internal_stop_codon	3575312..3575314(+)		WP_003900661.1	MFS transporter	99.8	82.8	70.5
MGA_3282	LOCUS_31520	sequence1:3581946..3582281(-)	partial			WP_003416932.1	Rv3235 family protein	100.0	52.6	67.9
MGA_3294	LOCUS_31640	sequence1:3594162..3595133(+)	frameshift		3594953,3594980,3594941	WP_013226953.1	helix-turn-helix domain-containing protein	76.2	58.7	33.7
MGA_3295	LOCUS_31650	sequence1:3595133..3595468(+)	partial			WP_013226953.1	helix-turn-helix domain-containing protein	90.1	23.8	45.0
MGA_3298	LOCUS_31680	sequence1:3600004..3601092(+)	partial			WP_011727145.1	EspA/EspE family type VII secretion system effector	42.0	83.9	28.9
MGA_3301	LOCUS_31710	sequence1:3601940..3602179(+)	frameshift		3601866	WP_003419545.1	type VII secretion system ESX-1 target EspD	98.7	40.8	41.2
MGA_3313	LOCUS_31830	sequence1:3612594..3613115(-)	partial			WP_003416883.1	diacylglycerol kinase family lipid kinase	98.3	53.0	60.0
MGA_3323	LOCUS_31920	sequence1:3621717..3622283(+)	frameshift,internal_stop_codon	3622282..3622284(+)	3621693	WP_003416873.1	ferritin-like fold-containing protein	100.0	81.4	87.2
MGA_3352	LOCUS_32200	sequence1:3655123..3655425(+)	internal_stop_codon	3655090..3655092(+)		WP_013222011.1	FKBP-type peptidyl-prolyl cis-trans isomerase	97.0	78.2	79.4
MGA_3362	LOCUS_32300	sequence1:3665980..3666534(+)	internal_stop_codon	3666532..3666534(+)		WP_010950737.1	DUF2652 domain-containing protein	100.0	75.1	75.5
MGA_3364	LOCUS_32320	sequence1:3666763..3667155(+)	partial			WP_003900651.1	hypothetical protein	67.7	58.1	62.4
MGA_3369	LOCUS_32370	sequence1:3671600..3672193(+)	internal_stop_codon	3672191..3672193(+)		WP_029104523.1	LLM class F420-dependent oxidoreductase	97.5	58.9	74.5
MGA_3370	LOCUS_32380	sequence1:3672251..3672598(+)	internal_stop_codon	3672191..3672193(+)		WP_029104523.1	LLM class F420-dependent oxidoreductase	100.0	34.0	67.0
MGA_3371	LOCUS_32390	sequence1:3672660..3673739(-)	partial			WP_010950436.1	PE family protein	18.1	8.2	60.0
MGA_3378	LOCUS_32450	sequence1:3680279..3680830(+)	partial			WP_003416593.1	hypothetical protein	56.8	65.0	61.5
MGA_3379	LOCUS_32460	sequence1:3681040..3682233(+)	partial			WP_003906993.1	PPE family protein	98.2	63.4	43.5
MGA_3381	LOCUS_32470	sequence1:3683609..3684328(+)	partial			WP_003405919.1	PPE family protein	98.7	34.8	42.6
MGA_3396	LOCUS_32620	sequence1:3700316..3701656(+)	partial			WP_003901551.1	PPE family protein	38.8	42.3	70.5
MGA_3408	LOCUS_32730	sequence1:3712808..3713617(-)	partial			WP_011728131.1	alpha/beta fold hydrolase	98.9	64.3	80.1
MGA_3419	LOCUS_32820	sequence1:3728286..3728465(-)	partial			WP_003416381.1	PPE family protein	98.3	14.7	74.1
MGA_3422	LOCUS_32840	sequence1:3729927..3730607(-)	partial			WP_003416381.1	PPE family protein	97.8	56.3	63.3
MGA_3432	LOCUS_32940	sequence1:3741118..3742725(+)	partial			WP_003405897.1	HNH endonuclease signature motif containing protein	64.7	76.5	62.7
MGA_3437	LOCUS_32990	sequence1:3747927..3748427(+)	partial			WP_003416124.1	hypothetical protein	39.2	44.1	64.6
MGA_3444	LOCUS_33050	sequence1:3753432..3754964(-)	partial			WP_010950653.1	alpha/beta hydrolase	41.6	32.3	60.8
MGA_3457	LOCUS_33170	sequence1:3768070..3768417(+)	internal_stop_codon	3768415..3768417(+)		WP_010950872.1	PPE family protein	99.1	8.5	49.1
MGA_3458	LOCUS_33180	sequence1:3768421..3769140(+)	partial			WP_003901542.1	triacylglycerol lipase LipY	95.0	46.7	52.0
MGA_3461	LOCUS_33200	sequence1:3772791..3773237(+)	partial			WP_030862061.1	pyridoxamine 5'-phosphate oxidase family protein	86.5	41.7	35.7
MGA_3465	LOCUS_33240	sequence1:3777067..3777555(+)	partial			WP_003418931.1	LppP/LprE family lipoprotein	88.3	62.7	43.4
MGA_3468	LOCUS_33270	sequence1:3779522..3780538(+)	frameshift		3780451	WP_003416097.1	acyl-CoA dehydrogenase family protein	86.7	77.9	79.5
MGA_3478	LOCUS_33370	sequence1:3790176..3791600(-)	frameshift		3790286	WP_011728547.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	89.9	83.6	75.4
MGA_3480	LOCUS_33380	sequence1:3795027..3795791(+)	frameshift		3795027	WP_003891984.1	DUF808 domain-containing protein	98.4	78.7	65.9
MGA_3486	LOCUS_33440	sequence1:3800939..3802000(-)	internal_stop_codon	3802073..3802075(-)		WP_011728345.1	YdiU family protein	100.0	72.3	62.2
MGA_3487	LOCUS_33450	sequence1:3802073..3802405(-)	internal_stop_codon	3802073..3802075(-)		WP_011728345.1	YdiU family protein	98.2	22.3	63.9
MGA_3494	LOCUS_33520	sequence1:3808438..3808614(-)	frameshift		3808700	WP_005082635.1	NAD(P)/FAD-dependent oxidoreductase	79.3	9.7	82.6
MGA_3495	LOCUS_33530	sequence1:3808611..3809861(-)	frameshift		3808700	WP_005082635.1	NAD(P)/FAD-dependent oxidoreductase	91.6	80.5	72.4
MGA_3496	LOCUS_33540	sequence1:3809858..3811405(-)	frameshift,internal_stop_codon	3811438..3811440(-)	3811356	WP_003405912.1	DUF3556 domain-containing protein	92.0	81.2	39.2
MGA_3500	LOCUS_33580	sequence1:3814191..3814805(-)	frameshift,internal_stop_codon	3814829..3814831(-)	3814831	WP_003416051.1	HNH endonuclease signature motif containing protein	100.0	48.1	80.4
MGA_3501	LOCUS_33590	sequence1:3814805..3815467(-)	frameshift,internal_stop_codon	3814829..3814831(-)	3814831	WP_003416051.1	HNH endonuclease signature motif containing protein	96.8	50.2	72.8
MGA_3515	LOCUS_33710	sequence1:3829521..3829757(-)	internal_stop_codon	3829521..3829523(-)		WP_010886173.1	PE family protein	100.0	10.9	62.8
MGA_3523	LOCUS_33780	sequence1:3836302..3836904(+)	frameshift		3836253,3836061	WP_085976166.1	IS3 family transposase	98.0	51.2	45.7
MGA_3525	LOCUS_33800	sequence1:3837532..3838116(-)	partial			WP_010950451.1	PE family protein	44.8	10.5	40.2
MGA_3526	LOCUS_33810	sequence1:3838500..3839006(+)	frameshift,internal_stop_codon	3838488..3838490(+)	3838997	WP_051618845.1	GMC family oxidoreductase	97.6	23.9	43.1
MGA_3527	LOCUS_33820	sequence1:3839015..3840193(+)	frameshift,internal_stop_codon	3840192..3840194(+)	3838997	WP_051618845.1	GMC family oxidoreductase	99.7	56.6	49.4
MGA_3528	LOCUS_33830	sequence1:3840209..3840580(+)	internal_stop_codon	3840191..3840193(+)		WP_051618845.1	GMC family oxidoreductase	78.0	14.3	52.0
MGA_3532	LOCUS_33870	sequence1:3843623..3844483(+)	frameshift		3843545	WP_013224377.1	wax ester/triacylglycerol synthase family O-acyltransferase	81.1	50.3	40.5
MGA_3535	LOCUS_33900	sequence1:3847604..3848746(-)	frameshift		3847656,3848751	WP_011731217.1	alkyl sulfatase dimerization domain-containing protein	96.3	58.3	74.3
MGA_3536	LOCUS_33910	sequence1:3848641..3849504(-)	frameshift		3848751	WP_011731217.1	alkyl sulfatase dimerization domain-containing protein	89.2	41.1	73.5
MGA_3539	LOCUS_33940	sequence1:3850592..3850783(-)	frameshift		3850624	WP_003416005.1	TetR/AcrR family transcriptional regulator	87.3	27.2	65.5
MGA_3544	LOCUS_33990	sequence1:3854760..3855872(-)	frameshift		3855873	WP_003917116.1	carbon starvation CstA family protein	99.7	48.7	69.9
MGA_3548	LOCUS_34030	sequence1:3860016..3860600(+)	partial			WP_014877829.1	hypothetical protein	61.3	72.0	38.6
MGA_3557	LOCUS_34110	sequence1:3870200..3870556(-)	partial			WP_011730106.1	OB-fold domain-containing protein	77.1	16.7	40.2
MGA_3558	LOCUS_34120	sequence1:3870607..3871800(+)	partial			WP_011730106.1	OB-fold domain-containing protein	98.7	69.3	43.2
MGA_3604	LOCUS_34570	sequence1:3922060..3922563(+)	partial			WP_013226322.1	MarR family winged helix-turn-helix transcriptional regulator	70.7	75.0	32.2
MGA_3609	LOCUS_34620	sequence1:3925853..3926032(-)	internal_stop_codon	3925853..3925855(-)		WP_036462762.1	TIGR01777 family oxidoreductase	93.2	12.3	72.7
MGA_3610	LOCUS_34630	sequence1:3926099..3927076(+)	partial			WP_003114566.1	oxidoreductase	68.9	76.1	35.9
MGA_3623	LOCUS_34760	sequence1:3939664..3939927(+)	partial			WP_003899860.1	radical SAM protein	48.3	9.6	71.4
MGA_3625	LOCUS_34770	sequence1:3940761..3941150(+)	partial			WP_003899860.1	radical SAM protein	83.7	24.7	63.9
MGA_3651	LOCUS_35030	sequence1:3970517..3971824(-)	frameshift		3971838	WP_003898435.1	RND transporter MmpL1	96.3	43.7	77.1
MGA_3652	LOCUS_35040	sequence1:3971821..3973395(-)	frameshift		3971838	WP_003898435.1	RND transporter MmpL1	95.6	52.3	70.3
MGA_3654	LOCUS_35050	sequence1:3975583..3976584(-)	frameshift		3976598	WP_011963911.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	97.6	79.0	45.2
MGA_3659	LOCUS_35100	sequence1:3980427..3981089(+)	partial			WP_003415107.1	DNA-binding protein HupB	49.5	50.9	97.2
MGA_3685	LOCUS_35360	sequence1:4008885..4009238(+)	internal_stop_codon	4009236..4009238(+)		WP_003414922.1	PGL/p-HBAD biosynthesis rhamnosyltransferase	88.9	23.2	79.8
MGA_3686	LOCUS_35370	sequence1:4009335..4009694(+)	frameshift,internal_stop_codon	4009236..4009238(+)	4009670	WP_003414922.1	PGL/p-HBAD biosynthesis rhamnosyltransferase	94.1	24.9	80.4
MGA_3687	LOCUS_35380	sequence1:4009679..4010152(+)	frameshift		4009673	WP_003414922.1	PGL/p-HBAD biosynthesis rhamnosyltransferase	94.3	33.0	71.6
MGA_3690	LOCUS_35410	sequence1:4012717..4013115(+)	internal_stop_codon	4013113..4013115(+)		WP_010907550.1	LLM class flavin-dependent oxidoreductase	100.0	34.6	83.3
MGA_3691	LOCUS_35420	sequence1:4013239..4013787(+)	internal_stop_codon	4013113..4013115(+)		WP_003414891.1	phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase	100.0	47.8	83.5
MGA_3694	LOCUS_35450	sequence1:4016618..4017127(+)	frameshift		4017106	WP_010907552.1	chorismate pyruvate-lyase family protein	97.0	78.1	56.7
MGA_3700	LOCUS_35510	sequence1:4031848..4032264(+)	frameshift		4032201,4032516	WP_003414900.1	phthiotriol/phenolphthiotriol dimycocerosates methyltransferase	85.5	43.7	83.9
MGA_3701	LOCUS_35520	sequence1:4032201..4032521(+)	frameshift		4032201,4032516	WP_003414900.1	phthiotriol/phenolphthiotriol dimycocerosates methyltransferase	96.2	37.8	69.6
MGA_3710	LOCUS_35610	sequence1:4060095..4061885(-)	partial			WP_003414835.1	phthiocerol type I polyketide synthase PpsB	99.2	39.4	64.6
MGA_3713	LOCUS_35630	sequence1:4064215..4066086(-)	frameshift		4064664	WP_003414835.1	phthiocerol type I polyketide synthase PpsB	75.6	30.4	81.5
MGA_3714	LOCUS_35640	sequence1:4066086..4067900(-)	partial			WP_003414835.1	phthiocerol type I polyketide synthase PpsB	95.4	37.1	56.0
MGA_3747	LOCUS_35960	sequence1:4104643..4105035(-)	frameshift		4105037	WP_013227040.1	GAF and ANTAR domain-containing protein	84.6	42.9	41.2
MGA_3756	LOCUS_36050	sequence1:4113360..4114148(+)	frameshift		4113186,4113334	WP_011728393.1	lactate 2-monooxygenase	100.0	67.7	80.5
MGA_3758	LOCUS_36070	sequence1:4115110..4115625(-)	partial			WP_003414678.1	M23 family metallopeptidase	87.1	59.8	73.8
MGA_3761	LOCUS_36100	sequence1:4117589..4117882(+)	frameshift		4117876,4117879	WP_010908420.1	amidase	99.0	19.7	55.2
MGA_3762	LOCUS_36110	sequence1:4117890..4119005(+)	frameshift		4117873	WP_003414672.1	amidase	99.5	78.0	71.5
MGA_3764	LOCUS_36130	sequence1:4119730..4120212(+)	partial			WP_011727224.1	MPT63 family protein	81.9	36.5	41.2
MGA_3766	LOCUS_36150	sequence1:4121282..4121899(-)	partial			WP_003414666.1	response regulator transcription factor	90.2	73.4	57.3
MGA_3774	LOCUS_36200	sequence1:4132369..4134807(-)	partial			WP_003914906.1	LuxR family transcriptional regulator	73.3	52.6	37.8
MGA_3786	LOCUS_36320	sequence1:4145696..4146499(-)	internal_stop_codon	4146578..4146580(-)		WP_011728649.1	acyl-CoA dehydrogenase family protein	99.3	67.1	78.7
MGA_3787	LOCUS_36330	sequence1:4146578..4146874(-)	internal_stop_codon	4146578..4146580(-)		WP_011728649.1	acyl-CoA dehydrogenase family protein	100.0	25.3	72.0
MGA_3795	LOCUS_36410	sequence1:4153238..4154239(+)	internal_stop_codon	4154237..4154239(+)		WP_011026895.1	heavy metal translocating P-type ATPase	97.0	41.6	64.4
MGA_3796	LOCUS_36420	sequence1:4154309..4155163(+)	internal_stop_codon	4154237..4154239(+)		WP_011026895.1	heavy metal translocating P-type ATPase	93.7	33.9	56.4
MGA_3800	LOCUS_36460	sequence1:4158068..4158769(+)	frameshift		4158736	WP_174519602.1	FAD/NAD(P)-binding protein	94.0	78.5	61.6
MGA_3804	LOCUS_36500	sequence1:4161453..4161728(-)	internal_stop_codon	4161747..4161749(-)		WP_011730501.1	DUF302 domain-containing protein	81.3	55.6	52.7
MGA_3838	LOCUS_36810	sequence1:4198508..4198687(-)	internal_stop_codon	4198508..4198510(-)		WP_011726740.1	plasmid pRiA4b ORF-3 family protein	64.4	16.3	71.1
MGA_3840	LOCUS_36830	sequence1:4199390..4199728(-)	frameshift,internal_stop_codon	4199390..4199392(-),4199372..4199374(-)	4199341	WP_011727590.1	IS1380-like element ISMsm11 family transposase	100.0	24.0	78.6
MGA_3841	LOCUS_36840	sequence1:4200033..4200521(-)	partial			WP_000555401.1	IS110-like element ISEc45 family transposase	80.2	34.2	40.0
MGA_3843	LOCUS_36860	sequence1:4203598..4204053(+)	frameshift,internal_stop_codon	4203477..4203479(+),4203453..4203455(+)	4203557,4203335	WP_011728521.1	IS30-like element ISMsm8 family transposase	99.3	32.2	72.0
MGA_3844	LOCUS_36870	sequence1:4204071..4205126(+)	frameshift		4204898	WP_002725028.1	acyl-CoA dehydrogenase family protein	75.8	66.5	32.8
MGA_3849	LOCUS_36920	sequence1:4207629..4207811(-)	frameshift		4208080	WP_010908538.1	pyridoxal phosphate-dependent aminotransferase	98.3	14.7	76.3
MGA_3850	LOCUS_36930	sequence1:4207751..4208827(-)	frameshift		4208080	WP_003899255.1	pyridoxal phosphate-dependent aminotransferase	69.6	62.2	77.5
MGA_3860	LOCUS_37020	sequence1:4217701..4218288(+)	frameshift		4217692	WP_003411717.1	CDP-diacylglycerol diphosphatase	99.0	74.2	69.4
MGA_3868	LOCUS_37100	sequence1:4225327..4226475(-)	partial			WP_013227909.1	DUF5685 family protein	86.1	69.3	52.1
MGA_3878	LOCUS_37190	sequence1:4237385..4237711(+)	partial			WP_011726830.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	94.4	37.9	49.0
MGA_3880	LOCUS_37200	sequence1:4239558..4240070(+)	partial			WP_011726830.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	93.5	58.0	60.4
MGA_3882	LOCUS_37220	sequence1:4241596..4242960(+)	partial			WP_010886177.1	PE family protein	28.0	21.7	60.6
MGA_3885	LOCUS_37250	sequence1:4244214..4244774(-)	internal_stop_codon	4244793..4244795(-)		WP_010907864.1	FAD-dependent oxidoreductase	100.0	40.8	67.7
MGA_3886	LOCUS_37260	sequence1:4244793..4245578(-)	internal_stop_codon	4244793..4244795(-)		WP_010950826.1	ferredoxin--NADP(+) reductase FprA	98.5	56.4	75.1
MGA_3893	LOCUS_37320	sequence1:4253408..4253638(+)	partial			WP_007054642.1	potassium channel family protein	82.9	31.4	48.8
MGA_3900	LOCUS_37390	sequence1:4257653..4258279(+)	partial			WP_010940624.1	class I SAM-dependent methyltransferase	51.9	43.1	35.3
MGA_3905	LOCUS_37440	sequence1:4262872..4264809(+)	partial			WP_003899240.1	Hsp70 family protein	73.6	77.0	65.3
MGA_3906	LOCUS_37450	sequence1:4264833..4265189(-)	partial			WP_223495338.1	hypothetical protein	39.0	68.6	58.3
MGA_3909	LOCUS_37480	sequence1:4267841..4268929(+)	frameshift		4267787	WP_003901363.1	apolipoprotein N-acyltransferase	95.6	69.3	68.4
MGA_3910	LOCUS_37490	sequence1:4268926..4269375(+)	partial			WP_011729750.1	SHOCT domain-containing protein	94.6	54.7	54.6
MGA_3912	LOCUS_37500	sequence1:4271072..4271365(+)	partial			WP_011729750.1	SHOCT domain-containing protein	97.9	40.2	43.7
MGA_3918	LOCUS_37560	sequence1:4275840..4276085(-)	partial			WP_003411608.1	hypothetical protein	93.8	45.5	76.3
MGA_3942	LOCUS_37790	sequence1:4301514..4302026(-)	frameshift,internal_stop_codon	4301514..4301516(-)	4301312,4301697,4301314,4301363,4301336,4301354,4301357	WP_010886084.1	PE family protein	74.1	16.1	42.1
MGA_3945	LOCUS_37820	sequence1:4304439..4305500(+)	partial			WP_003112998.1	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	66.3	72.8	39.0
MGA_3957	LOCUS_37940	sequence1:4315848..4316480(-)	frameshift		4316619	WP_003411507.1	HAD family hydrolase	100.0	72.2	72.9
MGA_3962	LOCUS_37990	sequence1:4321916..4324192(+)	frameshift		4323010,4322722	WP_010886133.1	PE family protein	10.4	14.5	53.2
MGA_3965	LOCUS_38020	sequence1:4327407..4327835(+)	partial			WP_005084922.1	heme-binding protein	57.7	74.5	56.1
MGA_3967	LOCUS_38040	sequence1:4328872..4329420(+)	internal_stop_codon	4329418..4329420(+)		WP_011729712.1	wax ester/triacylglycerol synthase family O-acyltransferase	98.9	38.7	83.3
MGA_3968	LOCUS_38050	sequence1:4329460..4330263(+)	internal_stop_codon	4329418..4329420(+)		WP_011729712.1	wax ester/triacylglycerol synthase family O-acyltransferase	99.6	57.2	72.6
MGA_3977	LOCUS_38140	sequence1:4341756..4343480(-)	frameshift		4341779,4341788	WP_010950748.1	PE family protein	20.6	22.2	48.8
MGA_3984	LOCUS_38210	sequence1:4348697..4349311(+)	internal_stop_codon	4349309..4349311(+)		WP_003406574.1	ABC transporter ATP-binding protein	100.0	35.1	50.0
MGA_3985	LOCUS_38220	sequence1:4349372..4350376(+)	internal_stop_codon	4349309..4349311(+)		WP_011730254.1	ABC transporter ATP-binding protein	99.4	56.1	58.5
MGA_4000	LOCUS_38340	sequence1:4366584..4367849(+)	partial			WP_010886125.1	PE domain-containing protein	95.0	43.5	31.0
MGA_4013	LOCUS_38450	sequence1:4382235..4382903(+)	internal_stop_codon	4382901..4382903(+)		WP_010950571.1	type I polyketide synthase	99.5	10.4	86.4
MGA_4015	LOCUS_38470	sequence1:4388618..4389541(+)	frameshift		4389382	WP_003911579.1	type I polyketide synthase	83.4	16.0	79.7
MGA_4026	LOCUS_38580	sequence1:4408572..4410605(-)	partial			WP_010886133.1	PE family protein	17.3	23.5	65.0
MGA_4027	LOCUS_38590	sequence1:4411001..4411459(-)	partial			WP_003408366.1	TetR family transcriptional regulator	99.3	72.9	71.5
MGA_4030	LOCUS_38610	sequence1:4418450..4419133(-)	frameshift		4419138	WP_003898850.1	YcaO-like family protein	99.1	51.3	72.0
MGA_4054	LOCUS_38850	sequence1:4445846..4447615(-)	internal_stop_codon	4447754..4447756(-)		WP_003400794.1	non-ribosomal peptide synthetase Nrp	56.0	13.3	66.2
MGA_4055	LOCUS_38860	sequence1:4447754..4449460(-)	internal_stop_codon	4447754..4447756(-)		WP_012296729.1	non-ribosomal peptide synthetase	99.6	16.4	50.3
MGA_4070	LOCUS_38980	sequence1:4464307..4465269(+)	partial			WP_000985413.1	type I restriction-modification system subunit M	99.7	40.8	58.3
MGA_4072	LOCUS_38990	sequence1:4468554..4469285(+)	partial			WP_011035716.1	restriction endonuclease subunit S	93.4	54.7	33.3
MGA_4077	LOCUS_39040	sequence1:4476042..4477046(+)	partial			WP_009930934.1	hypothetical protein	78.4	63.2	27.4
MGA_4083	LOCUS_39100	sequence1:4482483..4483559(+)	partial			WP_010886118.1	PE family protein	37.4	18.1	54.5
MGA_4084	LOCUS_39110	sequence1:4483498..4484307(+)	frameshift		4483505	WP_011031745.1	glycoside hydrolase family 64 protein	91.8	62.6	28.0
MGA_4089	LOCUS_39160	sequence1:4486896..4487060(-)	partial			WP_208761996.1	transposase	72.2	24.5	74.4
MGA_4090	LOCUS_39170	sequence1:4487197..4488150(+)	partial			WP_013225221.1	galactose mutarotase	82.3	72.5	52.5
MGA_4091	LOCUS_39180	sequence1:4488147..4488404(-)	partial			WP_011391058.1	transposase	83.5	45.4	46.5
MGA_4093	LOCUS_39190	sequence1:4489959..4490231(-)	partial			WP_011087239.1	RidA family protein	87.8	61.4	49.4
MGA_4097	LOCUS_39230	sequence1:4494217..4494426(+)	frameshift,internal_stop_codon	4494424..4494426(+)	4494480	WP_003894403.1	GlsB/YeaQ/YmgE family stress response membrane protein	100.0	68.3	75.4
MGA_4098	LOCUS_39240	sequence1:4494734..4495024(-)	frameshift		4495034	WP_005110390.1	glycogen/starch/alpha-glucan phosphorylase	94.8	11.0	60.4
MGA_4099	LOCUS_39250	sequence1:4494987..4496591(-)	frameshift,internal_stop_codon	4496697..4496699(-)	4495034	WP_005110390.1	glycogen/starch/alpha-glucan phosphorylase	97.8	63.1	76.1
MGA_4100	LOCUS_39260	sequence1:4496697..4497251(-)	internal_stop_codon	4496697..4496699(-)		WP_005110390.1	glycogen/starch/alpha-glucan phosphorylase	88.6	19.7	80.4
MGA_4104	LOCUS_39300	sequence1:4501032..4502087(-)	partial			WP_013225324.1	serine hydrolase	86.6	28.5	26.4
MGA_4106	LOCUS_39320	sequence1:4503644..4505155(+)	frameshift		4505128,4505234,4505176	WP_011729139.1	MFS transporter	95.2	76.6	69.1
MGA_4107	LOCUS_39330	sequence1:4505286..4506707(+)	partial			WP_003911027.1	PE family protein	51.0	58.3	37.5
MGA_4108	LOCUS_39340	sequence1:4506759..4507421(-)	frameshift		4507689	WP_003899905.1	serine/threonine protein kinase PknK	92.7	18.5	51.5
MGA_4109	LOCUS_39350	sequence1:4507354..4508922(-)	frameshift		4507688,4509107	WP_003899905.1	serine/threonine protein kinase PknK	78.5	37.2	64.9
MGA_4110	LOCUS_39360	sequence1:4509024..4510082(-)	frameshift		4509107	WP_003899905.1	serine/threonine protein kinase PknK	88.6	28.1	71.5
MGA_4117	LOCUS_39430	sequence1:4517673..4517867(+)	frameshift		4517864	WP_011729279.1	acyltransferase	78.1	11.3	80.0
MGA_4118	LOCUS_39440	sequence1:4517894..4519027(+)	frameshift		4517864	WP_011729279.1	acyltransferase	96.3	81.4	59.8
MGA_4123	LOCUS_39490	sequence1:4525629..4526162(-)	internal_stop_codon	4526196..4526198(-)		WP_029104228.1	FAD-dependent oxidoreductase	95.5	45.6	62.1
MGA_4124	LOCUS_39500	sequence1:4526196..4526753(-)	internal_stop_codon	4526196..4526198(-)		WP_029104228.1	FAD-dependent oxidoreductase	99.5	49.6	56.5
MGA_4128	LOCUS_39540	sequence1:4530571..4531341(+)	internal_stop_codon	4531339..4531341(+)		WP_003906993.1	PPE family protein	85.5	36.9	46.6
MGA_4129	LOCUS_39550	sequence1:4531426..4534245(+)	frameshift,internal_stop_codon	4531339..4531341(+)	4531411,4531845,4533799,4531912,4534125,4531326	WP_004536696.1	ESPR-type extended signal peptide-containing protein	98.0	57.8	21.8
MGA_4131	LOCUS_39570	sequence1:4535328..4536569(+)	partial			WP_005114807.1	divalent metal cation transporter	79.4	59.2	36.3
MGA_4134	LOCUS_39600	sequence1:4538872..4539864(+)	frameshift		4539768,4539762,4539750	WP_010886116.1	PE family protein	39.4	26.5	59.2
MGA_4139	LOCUS_39650	sequence1:4544730..4545578(-)	partial			WP_011029339.1	SDR family oxidoreductase	94.3	46.0	43.1
MGA_4141	LOCUS_39670	sequence1:4547091..4547558(+)	partial			WP_005479856.1	2,4'-dihydroxyacetophenone dioxygenase family protein	57.4	54.7	36.6
MGA_4145	LOCUS_39710	sequence1:4549637..4551166(+)	internal_stop_codon	4551164..4551166(+)		WP_014467867.1	molybdopterin-dependent oxidoreductase	97.1	68.1	52.0
MGA_4146	LOCUS_39720	sequence1:4551251..4551859(+)	frameshift		4551157,4551239	WP_011027934.1	molybdopterin oxidoreductase family protein	100.0	27.0	54.5
MGA_4152	LOCUS_39770	sequence1:4557416..4558051(+)	partial			WP_011727782.1	APC family permease	98.1	39.7	70.5
MGA_4154	LOCUS_39780	sequence1:4559437..4560072(+)	partial			WP_011727782.1	APC family permease	90.5	36.6	64.4
MGA_4155	LOCUS_39790	sequence1:4560097..4560585(+)	internal_stop_codon	4560583..4560585(+)		WP_011030368.1	gamma-aminobutyraldehyde dehydrogenase	98.8	33.4	65.6
MGA_4156	LOCUS_39800	sequence1:4560673..4561542(+)	internal_stop_codon	4560583..4560585(+)		WP_011030368.1	gamma-aminobutyraldehyde dehydrogenase	96.5	58.0	64.2
MGA_4163	LOCUS_39870	sequence1:4569800..4570573(+)	partial			WP_004453954.1	class II aldolase/adducin family protein	59.1	70.4	28.1
MGA_4172	LOCUS_39960	sequence1:4581497..4582012(+)	internal_stop_codon	4582010..4582012(+)		WP_003408560.1	FAD-dependent oxidoreductase	100.0	37.2	88.3
MGA_4173	LOCUS_39970	sequence1:4582217..4582678(+)	internal_stop_codon	4582010..4582012(+)		WP_003408560.1	FAD-dependent oxidoreductase	97.4	32.4	80.5
MGA_4179	LOCUS_40030	sequence1:4587848..4588222(-)	partial			WP_003897321.1	hypothetical protein	96.8	57.6	47.9
MGA_4181	LOCUS_40050	sequence1:4589095..4589592(+)	frameshift		4589030	WP_005114066.1	SDR family oxidoreductase	97.0	56.3	65.6
MGA_4193	LOCUS_40170	sequence1:4597496..4598329(+)	frameshift		4598305,4598302	WP_010886091.1	PE family protein	46.2	21.1	63.3
MGA_4201	LOCUS_40250	sequence1:4608326..4611439(+)	partial			WP_010886118.1	PE family protein	11.8	16.5	65.6
MGA_4205	LOCUS_40290	sequence1:4615890..4616279(-)	internal_stop_codon	4616462..4616464(-)		WP_005081171.1	cysteine hydrolase	78.3	44.9	71.3
MGA_4207	LOCUS_40310	sequence1:4617324..4618817(-)	internal_stop_codon	4618845..4618847(-)		WP_003408781.1	DUF4407 domain-containing protein	99.4	80.1	65.8
MGA_4208	LOCUS_40320	sequence1:4618845..4619156(-)	internal_stop_codon	4618845..4618847(-)		WP_003408781.1	DUF4407 domain-containing protein	94.2	16.8	63.0
MGA_4211	LOCUS_40350	sequence1:4620283..4620540(+)	partial			WP_011729050.1	SRPBCC family protein	96.5	57.7	58.5
MGA_4231	LOCUS_40540	sequence1:4647378..4647611(+)	frameshift		4647602	WP_010950602.1	type VII secretion system ESX-5 target PPE26	77.9	15.3	61.7
MGA_4232	LOCUS_40550	sequence1:4647608..4648606(+)	frameshift		4647602	WP_003405368.1	PPE family protein	98.5	80.6	37.8
MGA_4240	LOCUS_40630	sequence1:4657221..4657751(-)	partial			WP_013531164.1	alpha/beta hydrolase	94.9	64.8	29.4
MGA_4241	LOCUS_40640	sequence1:4658015..4658575(+)	internal_stop_codon	4658573..4658575(+)		WP_003901259.1	sterol desaturase family protein	92.5	57.3	78.5
MGA_4242	LOCUS_40650	sequence1:4658585..4658965(+)	internal_stop_codon	4658573..4658575(+)		WP_003901259.1	sterol desaturase family protein	99.2	41.0	79.2
MGA_4246	LOCUS_40690	sequence1:4662240..4663103(-)	frameshift		4662605,4662599	WP_010950524.1	PE family protein	58.5	27.2	39.9
MGA_4263	LOCUS_40840	sequence1:4682740..4683642(-)	frameshift		4682931,4682934,4682904,4682937,4682907	WP_010950491.1	PE family protein	31.3	11.5	67.3
MGA_4266	LOCUS_40860	sequence1:4688960..4689352(+)	frameshift		4688981,4689341	WP_003891691.1	DUF4194 domain-containing protein	92.3	50.4	58.7
MGA_4268	LOCUS_40880	sequence1:4692974..4693630(-)	partial			WP_003903746.1	hypothetical protein	97.2	65.9	46.5
MGA_4270	LOCUS_40900	sequence1:4693927..4694625(-)	partial			WP_010950655.1	DUF5631 domain-containing protein	99.1	31.9	64.3
MGA_4273	LOCUS_40930	sequence1:4696892..4697146(-)	frameshift		4697196,4696989,4696943	WP_225580817.1	IS3 family transposase	97.6	21.2	61.0
MGA_4274	LOCUS_40940	sequence1:4697767..4699629(+)	internal_stop_codon	4699627..4699629(+)		WP_011730306.1	EspA/EspE family type VII secretion system effector	66.3	53.3	42.0
MGA_4278	LOCUS_40980	sequence1:4701320..4701610(+)	internal_stop_codon	4701608..4701610(+)		WP_003899158.1	hypothetical protein	100.0	19.7	68.8
MGA_4279	LOCUS_40990	sequence1:4701635..4702765(+)	internal_stop_codon	4701608..4701610(+)		WP_003899158.1	hypothetical protein	99.5	77.2	72.1
MGA_4289	LOCUS_41090	sequence1:4709550..4711235(+)	frameshift		4710923	WP_005114814.1	RND family transporter	79.7	47.2	72.9
MGA_4290	LOCUS_41100	sequence1:4711123..4712544(+)	frameshift		4710923	WP_005114814.1	RND family transporter	86.9	43.4	77.4
MGA_4296	LOCUS_41160	sequence1:4717691..4720243(-)	partial			WP_015445472.1	AAA family ATPase	94.0	73.6	29.2
MGA_4299	LOCUS_41190	sequence1:4722167..4722742(-)	frameshift		4722765	WP_003409355.1	SDR family oxidoreductase	97.9	65.4	52.4
MGA_4300	LOCUS_41200	sequence1:4722739..4722993(-)	frameshift		4722765	WP_003409355.1	SDR family oxidoreductase	89.3	26.2	65.3
MGA_4313	LOCUS_41330	sequence1:4736565..4738679(+)	frameshift		4738676	WP_003902238.1	apolipoprotein N-acyltransferase	85.5	66.1	73.3
MGA_4314	LOCUS_41340	sequence1:4738705..4739511(+)	frameshift		4738676,4739493	WP_003902238.1	apolipoprotein N-acyltransferase	95.5	29.3	82.4
MGA_4329	LOCUS_41480	sequence1:4764081..4764734(+)	frameshift		4764479	WP_003899143.1	ketosteroid isomerase family protein	74.2	60.0	68.3
MGA_4330	LOCUS_41490	sequence1:4764622..4764894(+)	frameshift		4764482	WP_003899143.1	ketosteroid isomerase family protein	100.0	34.0	54.4
MGA_4331	LOCUS_41500	sequence1:4764976..4765893(+)	frameshift,internal_stop_codon	4765891..4765893(+)	4765914	WP_010908336.1	sugar ABC transporter substrate-binding protein	94.1	64.5	74.9
MGA_4332	LOCUS_41510	sequence1:4766025..4766291(+)	frameshift,internal_stop_codon	4765891..4765893(+)	4765914	WP_010908336.1	sugar ABC transporter substrate-binding protein	100.0	19.8	76.1
MGA_4337	LOCUS_41560	sequence1:4770386..4771252(+)	frameshift		4771027,4771030	WP_014000955.1	PE family protein	41.7	18.8	66.7
MGA_4339	LOCUS_41580	sequence1:4771656..4772285(+)	frameshift,internal_stop_codon	4771852..4771854(+),4772284..4772286(+),4772290..4772292(+)	4771653,4771878,4771656,4771593,4771614	WP_014000955.1	PE family protein	39.2	12.8	37.8
MGA_4342	LOCUS_41610	sequence1:4774002..4774781(+)	partial			WP_003401488.1	type VII secretion system ESX-3 target PPE4	66.4	33.5	62.2
MGA_4343	LOCUS_41620	sequence1:4774805..4775194(+)	partial			WP_010950813.1	PPE family protein	58.9	17.2	56.6
MGA_4346	LOCUS_41650	sequence1:4777641..4778909(+)	partial			WP_011727070.1	PPE family protein	50.0	40.2	41.5
MGA_4350	LOCUS_41690	sequence1:4780667..4781173(+)	internal_stop_codon	4781171..4781173(+)		WP_005115250.1	acyl-CoA dehydrogenase family protein	85.7	40.9	33.3
MGA_4351	LOCUS_41700	sequence1:4781180..4781734(+)	internal_stop_codon	4781171..4781173(+)		WP_003895886.1	acyl-CoA dehydrogenase family protein	98.9	52.6	44.0
MGA_4359	LOCUS_41780	sequence1:4786808..4787206(+)	partial			WP_005056472.1	MerR family transcriptional regulator	50.0	71.7	65.2
MGA_4368	LOCUS_41870	sequence1:4794618..4795508(-)	internal_stop_codon	4794618..4794620(-)		WP_013223158.1	acyltransferase	99.7	66.7	33.1
MGA_4376	LOCUS_41930	sequence1:4804920..4805747(-)	frameshift		4805766	WP_003410042.1	NAD(P)/FAD-dependent oxidoreductase	95.6	49.0	76.0
MGA_4377	LOCUS_41940	sequence1:4805734..4806288(-)	frameshift		4805766	WP_003410042.1	NAD(P)/FAD-dependent oxidoreductase	94.6	32.4	85.6
MGA_4381	LOCUS_41970	sequence1:4809901..4810167(+)	partial			WP_013225728.1	enoyl-CoA hydratase-related protein	87.5	26.6	36.4
MGA_4382	LOCUS_41980	sequence1:4810223..4811554(-)	partial			WP_010886125.1	PE domain-containing protein	73.4	37.3	31.8
MGA_4383	LOCUS_41990	sequence1:4811700..4812044(-)	internal_stop_codon	4812063..4812065(-)		WP_011728257.1	cupin domain-containing protein	95.6	31.3	78.9
MGA_4384	LOCUS_42000	sequence1:4812063..4812764(-)	internal_stop_codon	4812063..4812065(-)		WP_011728257.1	cupin domain-containing protein	99.1	66.4	75.8
MGA_4385	LOCUS_42010	sequence1:4812953..4813702(+)	internal_stop_codon	4813700..4813702(+)		WP_005079744.1	class I SAM-dependent methyltransferase	83.9	78.3	60.3
MGA_4388	LOCUS_42040	sequence1:4815443..4815904(-)	frameshift		4815942	WP_003403977.1	MFS transporter	64.7	20.7	46.4
MGA_4389	LOCUS_42050	sequence1:4815853..4817127(-)	frameshift		4815942	WP_003403977.1	MFS transporter	90.8	69.8	59.0
MGA_4393	LOCUS_42090	sequence1:4823834..4825912(+)	internal_stop_codon	4825910..4825912(+)		WP_010950392.1	LuxR family transcriptional regulator	98.8	63.1	54.7
MGA_4394	LOCUS_42100	sequence1:4825952..4827070(+)	internal_stop_codon	4825910..4825912(+)		WP_003401912.1	LuxR family transcriptional regulator	100.0	34.8	52.2
MGA_4402	LOCUS_42180	sequence1:4834002..4834316(+)	partial			WP_005089627.1	hypothetical protein	67.3	68.2	45.3
MGA_4405	LOCUS_42210	sequence1:4835754..4837628(-)	frameshift		4835840,4835843	WP_099318959.1	PE family protein	18.9	25.8	54.2
MGA_4409	LOCUS_42250	sequence1:4844414..4844947(+)	frameshift		4844935	WP_003401347.1	PPE family protein	91.0	29.0	64.0
MGA_4410	LOCUS_42260	sequence1:4844944..4846122(+)	frameshift		4844935	WP_003401347.1	PPE family protein	96.7	66.7	45.5
MGA_4413	LOCUS_42290	sequence1:4847595..4849559(-)	partial			WP_011730586.1	LpqN/LpqT family lipoprotein	52.3	56.5	55.4
MGA_4414	LOCUS_42300	sequence1:4849700..4850866(-)	partial			WP_223294576.1	DUF3179 domain-containing protein	71.9	80.2	23.2
MGA_4418	LOCUS_42340	sequence1:4852859..4853491(-)	internal_stop_codon	4853501..4853503(-)		WP_041322427.1	carboxylic acid reductase	99.5	18.1	69.3
MGA_4419	LOCUS_42350	sequence1:4853501..4856269(-)	internal_stop_codon	4853501..4853503(-)		WP_003413409.1	thioester reductase domain-containing protein	100.0	78.0	63.7
MGA_4421	LOCUS_42370	sequence1:4857562..4857999(+)	frameshift		4857454	WP_011815826.1	YcaO-like family protein	91.7	33.2	30.1
MGA_4423	LOCUS_42390	sequence1:4858691..4860451(-)	partial			WP_003899118.1	PecA family PE domain-processing aspartic protease	33.1	34.8	61.9
MGA_4431	LOCUS_42460	sequence1:4868019..4869119(+)	partial			WP_066877136.1	FAD-binding oxidoreductase	20.8	17.1	40.8
MGA_4438	LOCUS_42530	sequence1:4875051..4875365(+)	internal_stop_codon	4875363..4875365(+)		WP_011730055.1	DUF899 family protein	98.1	42.3	78.4
MGA_4439	LOCUS_42540	sequence1:4875378..4875746(+)	internal_stop_codon	4875363..4875365(+)		WP_012803748.1	DUF899 family protein	98.4	51.7	64.2
MGA_4441	LOCUS_42560	sequence1:4876930..4877652(-)	internal_stop_codon	4876930..4876932(-)		WP_005082717.1	DUF1906 domain-containing protein	90.4	79.6	62.2
MGA_4449	LOCUS_42630	sequence1:4886495..4887298(+)	frameshift		4886486	WP_011267273.1	NADP-dependent oxidoreductase	98.9	78.2	48.5
MGA_4450	LOCUS_42640	sequence1:4887367..4887720(+)	internal_stop_codon	4887718..4887720(+)		WP_005071913.1	glycoside hydrolase family 16 protein	100.0	42.2	63.2
MGA_4451	LOCUS_42650	sequence1:4887997..4888200(+)	internal_stop_codon	4887718..4887720(+)		WP_003896743.1	glycoside hydrolase family 16 protein	98.5	24.8	80.3
MGA_4453	LOCUS_42670	sequence1:4888665..4888934(+)	partial			WP_001040568.1	elongation factor Tu	95.5	22.3	50.0
MGA_4455	LOCUS_42690	sequence1:4889432..4890007(-)	frameshift		4890027	WP_003899661.1	PPE domain-containing protein	95.3	71.1	33.0
MGA_4456	LOCUS_42700	sequence1:4889929..4890651(-)	partial			WP_011727070.1	PPE family protein	70.4	32.3	49.1
MGA_4468	LOCUS_42820	sequence1:4900249..4901379(-)	internal_stop_codon	4901446..4901448(-)		WP_003904746.1	virulence factor Mce family protein	86.7	79.5	82.8
MGA_4469	LOCUS_42830	sequence1:4901529..4902005(-)	internal_stop_codon	4902030..4902032(-)		WP_003899104.1	virulence factor Mce family protein	100.0	46.2	83.5
MGA_4470	LOCUS_42840	sequence1:4902030..4902557(-)	internal_stop_codon	4902030..4902032(-)		WP_003899104.1	virulence factor Mce family protein	100.0	51.2	82.9
MGA_4477	LOCUS_42910	sequence1:4908010..4909245(+)	partial			WP_011726850.1	LuxR C-terminal-related transcriptional regulator	71.8	74.7	36.1
MGA_4490	LOCUS_43040	sequence1:4922709..4923308(+)	internal_stop_codon	4923306..4923308(+)		WP_003409707.1	enoyl-CoA hydratase	99.5	62.9	86.0
MGA_4491	LOCUS_43050	sequence1:4923315..4923659(+)	internal_stop_codon	4923306..4923308(+)		WP_003409707.1	enoyl-CoA hydratase	100.0	35.8	84.2
MGA_4492	LOCUS_43060	sequence1:4923677..4924135(+)	internal_stop_codon	4924133..4924135(+)		WP_003900438.1	acyl-CoA dehydrogenase	100.0	37.2	74.3
MGA_4493	LOCUS_43070	sequence1:4924139..4924906(+)	internal_stop_codon	4924133..4924135(+)		WP_003900438.1	acyl-CoA dehydrogenase	99.6	62.1	78.0
MGA_4496	LOCUS_43100	sequence1:4926603..4927685(-)	partial			WP_011106325.1	anaerobic sulfatase maturase	72.8	67.0	27.7
MGA_4498	LOCUS_43110	sequence1:4928884..4929756(-)	partial			WP_004083032.1	alpha-L-fucosidase	87.6	56.1	48.4
MGA_4501	LOCUS_43140	sequence1:4932826..4933254(+)	partial			WP_003111015.1	hypothetical protein	59.2	45.4	34.1
MGA_4502	LOCUS_43150	sequence1:4933267..4933824(+)	internal_stop_codon	4933252..4933254(+)		WP_011086660.1	antibiotic biosynthesis monooxygenase	80.0	44.3	32.3
MGA_4505	LOCUS_43180	sequence1:4935644..4937077(-)	partial			WP_003403397.1	arylsulfatase AtsD	99.4	60.7	47.1
MGA_4508	LOCUS_43210	sequence1:4938477..4940396(+)	partial			WP_003899979.1	bifunctional GNAT family N-acetyltransferase/aminoglycoside 3'-phosphotransferase/choline kinase family protein	56.3	76.6	61.5
MGA_4513	LOCUS_43260	sequence1:4947020..4947856(-)	internal_stop_codon	4947974..4947976(-)		WP_003900433.1	lipase LipD	98.9	61.7	83.3
MGA_4514	LOCUS_43270	sequence1:4947974..4948303(-)	internal_stop_codon	4947974..4947976(-)		WP_003900433.1	lipase LipD	100.0	24.7	88.2
MGA_4522	LOCUS_43340	sequence1:4955217..4955786(+)	partial			WP_003906700.1	PPE family protein	99.5	19.0	64.9
MGA_4532	LOCUS_43440	sequence1:4965113..4966354(+)	partial			WP_003401488.1	type VII secretion system ESX-3 target PPE4	46.0	37.8	52.3
MGA_4535	LOCUS_43460	sequence1:4969029..4969367(+)	partial			WP_003900428.1	hypothetical protein	98.2	71.2	75.7
MGA_4544	LOCUS_43540	sequence1:4977675..4978169(+)	frameshift,internal_stop_codon	4977473..4977475(+)	4977649,4977559	WP_003905677.1	macro domain-containing protein	92.7	44.3	86.2
MGA_4552	LOCUS_43620	sequence1:4985120..4986031(-)	frameshift,internal_stop_codon	4985120..4985122(-)	4984981,4984975	WP_010950616.1	PE family protein	38.9	24.5	70.3
MGA_4569	LOCUS_43790	sequence1:4999625..5000038(+)	partial			WP_003409420.1	resuscitation-promoting factor RpfC	95.6	73.9	61.7
MGA_4581	LOCUS_43900	sequence1:5016277..5016453(+)	partial			WP_003895017.1	(2Fe-2S)-binding protein	79.3	66.7	67.4
MGA_4591	LOCUS_44000	sequence1:5023489..5024772(+)	internal_stop_codon	5024770..5024772(+)		WP_011729178.1	endopeptidase La	100.0	54.8	77.5
MGA_4592	LOCUS_44010	sequence1:5024803..5025831(+)	internal_stop_codon	5024770..5024772(+)		WP_011729178.1	endopeptidase La	95.6	41.7	79.3
MGA_4598	LOCUS_44070	sequence1:5031123..5031767(-)	internal_stop_codon	5031894..5031896(-)		WP_003900424.1	CoA transferase	93.5	24.9	67.0
MGA_4599	LOCUS_44080	sequence1:5031894..5032259(-)	frameshift,internal_stop_codon	5031894..5031896(-)	5032242	WP_003900424.1	CoA transferase	97.5	14.7	83.1
MGA_4600	LOCUS_44090	sequence1:5032237..5033613(-)	frameshift		5032263	WP_003900424.1	CoA transferase	97.4	56.0	79.6
MGA_4609	LOCUS_44180	sequence1:5041033..5041983(-)	partial			WP_003409337.1	adhesin Apa	58.5	56.9	80.5
MGA_4612	LOCUS_44210	sequence1:5043572..5044342(-)	frameshift		5044374	WP_010931811.1	sulfide:quinone reductase	98.8	52.2	54.5
MGA_4613	LOCUS_44220	sequence1:5044258..5045043(-)	frameshift		5044377	WP_010931811.1	sulfide:quinone reductase	88.5	47.6	50.6
MGA_4633	LOCUS_44420	sequence1:5063663..5065246(+)	internal_stop_codon	5065244..5065246(+)		WP_010886091.1	PE family protein	23.9	20.8	52.4
MGA_4640	LOCUS_44480	sequence1:5076859..5079453(-)	partial			WP_011727967.1	hypothetical protein	62.6	41.9	28.2
MGA_4643	LOCUS_44510	sequence1:5083217..5084137(+)	frameshift,internal_stop_codon	5083069..5083071(+)	5083077	WP_010886139.1	5'-3' exonuclease	99.7	77.6	84.6
MGA_4661	LOCUS_44690	sequence1:5102807..5103817(-)	partial			WP_003411041.1	tRNA (adenine(58)-N(1))-methyltransferase TrmI	57.7	70.4	83.2
MGA_4666	LOCUS_44730	sequence1:5107437..5108645(+)	internal_stop_codon	5108643..5108645(+)		WP_003403977.1	MFS transporter	99.8	73.7	53.4
MGA_4674	LOCUS_44810	sequence1:5113577..5114356(-)	frameshift		5113753,5113729	WP_010886133.1	PE family protein	45.2	23.5	56.4
MGA_4676	LOCUS_44830	sequence1:5116200..5116325(-)	internal_stop_codon	5116523..5116525(-)		WP_003411056.1	methionine synthase	100.0	3.4	92.7
MGA_4681	LOCUS_44880	sequence1:5121406..5121663(-)	partial			WP_011391058.1	transposase	83.5	45.4	46.5
MGA_4689	LOCUS_44950	sequence1:5128301..5128603(-)	partial			WP_003411107.1	hypothetical protein	99.0	73.7	82.2
MGA_4696	LOCUS_45020	sequence1:5134916..5135173(-)	frameshift,internal_stop_codon	5134915..5134917(-)	5135217,5134893	WP_012296512.1	recombinase family protein	98.8	15.3	81.0
MGA_4697	LOCUS_45030	sequence1:5135821..5136021(-)	partial			WP_005110629.1	plasmid replication initiator protein	90.9	12.0	61.7
MGA_4699	LOCUS_45050	sequence1:5136260..5136901(-)	frameshift		5136430	WP_003414900.1	phthiotriol/phenolphthiotriol dimycocerosates methyltransferase	73.7	58.1	84.1
MGA_4702	LOCUS_45070	sequence1:5142019..5142234(-)	partial			WP_005118317.1	MmpS family transport accessory protein	100.0	55.0	56.9
MGA_4704	LOCUS_45080	sequence1:5143768..5146179(-)	partial			WP_013226861.1	non-ribosomal peptide synthetase	97.8	12.2	39.9
MGA_4706	LOCUS_45100	sequence1:5147617..5147850(-)	frameshift		5147858,5147795,5147765,5147864,5147833,5147867	WP_013224965.1	non-ribosomal peptide synthetase	85.7	1.2	45.8
MGA_4707	LOCUS_45110	sequence1:5147823..5148311(-)	frameshift,internal_stop_codon	5147823..5147825(-)	5148466,5147858,5147864,5147866,5147867,5147816	WP_011028842.1	non-ribosomal peptide synthetase	95.7	2.1	48.4
MGA_4711	LOCUS_45140	sequence1:5151653..5152072(-)	frameshift		5151569,5152050,5151708	WP_121576702.1	IS3 family transposase	82.7	30.9	36.5
MGA_4730	LOCUS_45330	sequence1:5173161..5174111(-)	frameshift		5173376,5173346,5173373	WP_010950878.1	PE family protein	47.5	23.0	59.3
MGA_4737	LOCUS_45390	sequence1:5180847..5181326(+)	partial			WP_003411235.1	N-acetyltransferase	100.0	74.3	71.7
MGA_4746	LOCUS_45470	sequence1:5191355..5192206(-)	internal_stop_codon	5192282..5192284(-)		WP_010957686.1	hydroxymethylglutaryl-CoA reductase (NADPH)	99.6	78.7	58.2
MGA_4749	LOCUS_45500	sequence1:5194550..5195206(-)	internal_stop_codon	5195267..5195269(-)		WP_012774950.1	mevalonate kinase	88.5	61.1	37.8
MGA_4766	LOCUS_45660	sequence1:5211542..5211943(-)	frameshift		5212017	WP_003411371.1	hypothetical protein	97.0	51.0	71.0
MGA_4767	LOCUS_45670	sequence1:5211940..5212230(-)	frameshift		5212017	WP_003411371.1	hypothetical protein	74.0	27.6	70.4
MGA_4789	LOCUS_45890	sequence1:5234777..5235727(+)	frameshift		5235613	WP_003899218.1	hypothetical protein	88.6	55.1	70.9
MGA_4790	LOCUS_45900	sequence1:5235636..5236334(+)	frameshift,internal_stop_codon	5236333..5236335(+),5235576..5235578(+)	5236115,5235556,5236199	WP_003899218.1	hypothetical protein	99.6	43.2	53.2
MGA_4793	LOCUS_45930	sequence1:5238635..5238838(+)	frameshift		5238823	WP_003411442.1	adenylyl cyclase	86.6	15.3	81.0
MGA_4794	LOCUS_45940	sequence1:5238811..5239779(+)	frameshift		5238823	WP_003411442.1	adenylyl cyclase	99.1	84.4	75.2
MGA_4797	LOCUS_45970	sequence1:5243826..5245610(+)	partial			WP_011729702.1	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	54.5	55.4	79.7
MGA_4801	LOCUS_46000	sequence1:5248632..5250518(-)	partial			WP_003420809.1	PE family protein	56.4	73.0	38.8
MGA_4803	LOCUS_46010	sequence1:5253642..5254457(-)	partial			WP_010886125.1	PE domain-containing protein	51.7	13.9	51.7
MGA_4804	LOCUS_46020	sequence1:5254751..5256667(-)	partial			WP_003420809.1	PE family protein	56.9	76.6	37.4
MGA_4819	LOCUS_46170	sequence1:5272642..5273427(+)	internal_stop_codon	5273425..5273427(+)		WP_010950514.1	serine/threonine-protein kinase PknH/PknJ	98.9	43.3	68.7
MGA_4829	LOCUS_46270	sequence1:5285679..5286215(+)	partial			WP_010970164.1	DNA ligase D	83.7	17.3	48.0
MGA_4836	LOCUS_46340	sequence1:5294804..5295289(+)	frameshift		5295151	WP_003408035.1	adenylate cyclase	68.9	25.3	47.3
MGA_4837	LOCUS_46350	sequence1:5295193..5296149(+)	frameshift		5295151	WP_003408035.1	adenylate cyclase	99.7	71.1	76.3
MGA_4848	LOCUS_46460	sequence1:5308336..5308731(-)	partial			WP_003408004.1	TM2 domain-containing protein	76.3	68.5	86.0
MGA_4849	LOCUS_46470	sequence1:5308795..5310738(-)	partial			WP_003408002.1	prolipoprotein diacylglyceryl transferase	53.3	73.3	70.7
MGA_4859	LOCUS_46560	sequence1:5318370..5319884(+)	partial			WP_011727267.1	serine/threonine-protein kinase	60.3	61.5	61.3
MGA_4861	LOCUS_46580	sequence1:5322175..5323140(+)	frameshift		5323056	WP_003021315.1	cyanophycin synthetase	91.3	32.3	37.8
MGA_4862	LOCUS_46590	sequence1:5323059..5324909(+)	frameshift		5323056	WP_003021315.1	cyanophycin synthetase	92.7	60.9	58.7
MGA_4863	LOCUS_46600	sequence1:5324906..5326441(+)	partial			WP_010918464.1	cyanophycinase	35.6	42.5	35.3
MGA_4881	LOCUS_46770	sequence1:5342606..5343304(-)	partial			WP_003914321.1	DUF2567 domain-containing protein	70.3	84.5	60.1
MGA_4884	LOCUS_46800	sequence1:5344746..5344997(-)	frameshift		5344999	WP_003407809.1	2'-5' RNA ligase family protein	95.2	46.7	81.0
MGA_4895	LOCUS_46910	sequence1:5360075..5360611(+)	partial			WP_003977465.1	pyridoxamine 5'-phosphate oxidase family protein	87.6	69.3	59.5
MGA_4904	LOCUS_47000	sequence1:5371541..5371864(-)	frameshift		5371910	WP_003407734.1	SDR family NAD(P)-dependent oxidoreductase	100.0	31.4	92.5
MGA_4905	LOCUS_47010	sequence1:5371884..5372558(-)	frameshift		5371910	WP_003407734.1	SDR family NAD(P)-dependent oxidoreductase	96.4	64.2	87.2
MGA_4906	LOCUS_47020	sequence1:5372797..5373126(+)	frameshift		5373048	WP_003407730.1	group 1 truncated hemoglobin GlbN	89.0	72.8	77.8
MGA_4908	LOCUS_47040	sequence1:5374354..5374992(+)	frameshift		5374346	WP_003898940.1	methyltransferase domain-containing protein	99.5	83.7	64.5
MGA_4910	LOCUS_47060	sequence1:5375926..5376459(-)	partial			WP_003407722.1	signal peptidase II	81.9	71.8	95.9
MGA_4914	LOCUS_47100	sequence1:5379620..5380141(+)	frameshift		5380090	WP_003420615.1	hypothetical protein	82.7	41.2	51.7
MGA_4915	LOCUS_47110	sequence1:5380090..5380671(+)	frameshift		5380090	WP_003420615.1	hypothetical protein	94.3	51.0	67.0
MGA_4925	LOCUS_47200	sequence1:5392742..5393284(-)	frameshift		5393331	WP_003407672.1	glycosyltransferase family 2 protein	87.8	66.7	65.5
MGA_4926	LOCUS_47210	sequence1:5393281..5393514(-)	frameshift		5393331	WP_003407672.1	glycosyltransferase family 2 protein	75.3	22.2	81.0
MGA_4930	LOCUS_47250	sequence1:5396772..5401769(+)	internal_stop_codon	5401767..5401769(+)		WP_010950554.1	type I polyketide synthase	100.0	79.7	64.5
MGA_4931	LOCUS_47260	sequence1:5401797..5402987(+)	internal_stop_codon	5401767..5401769(+)		WP_003913253.1	type I polyketide synthase	99.0	18.6	74.3
MGA_4932	LOCUS_47270	sequence1:5403041..5403697(+)	partial			WP_001087865.1	class I SAM-dependent methyltransferase	77.1	72.5	37.5
MGA_4940	LOCUS_47350	sequence1:5412485..5413174(+)	partial			WP_001977544.1	aldolase/citrate lyase family protein	68.1	56.9	28.2
MGA_4941	LOCUS_47360	sequence1:5413312..5413860(+)	internal_stop_codon	5413858..5413860(+)		WP_005420124.1	3-oxoacyl-ACP reductase FabG	91.2	76.6	34.8
MGA_4944	LOCUS_47390	sequence1:5416382..5416879(-)	frameshift		5416884	WP_003898905.1	glycosyltransferase 87 family protein	70.3	19.9	50.4
MGA_4945	LOCUS_47400	sequence1:5416876..5417937(-)	frameshift		5416884	WP_003898905.1	glycosyltransferase 87 family protein	99.2	59.1	52.7
MGA_4954	LOCUS_47470	sequence1:5429641..5429853(-)	partial			WP_003898901.1	phytanoyl-CoA dioxygenase family protein	91.4	23.4	65.6
MGA_4957	LOCUS_47500	sequence1:5432195..5433277(-)	partial			WP_010941286.1	glycosyltransferase family 2 protein	58.9	64.9	31.3
MGA_4958	LOCUS_47510	sequence1:5433280..5433687(-)	partial			WP_046463874.1	class I SAM-dependent methyltransferase	75.6	44.7	38.9
MGA_4964	LOCUS_47570	sequence1:5439090..5439269(-)	internal_stop_codon	5439288..5439290(-)		WP_003407599.1	serine hydrolase domain-containing protein	100.0	13.8	83.1
MGA_4965	LOCUS_47580	sequence1:5439288..5440220(-)	internal_stop_codon	5439288..5439290(-)		WP_003407599.1	serine hydrolase domain-containing protein	95.2	69.0	82.1
MGA_4970	LOCUS_47630	sequence1:5446693..5447667(+)	partial			WP_061481638.1	hypothetical protein	51.5	60.7	31.2
MGA_4971	LOCUS_47640	sequence1:5447672..5449192(-)	partial			WP_013225439.1	HAMP domain-containing sensor histidine kinase	65.6	72.6	46.2
MGA_4974	LOCUS_47670	sequence1:5451457..5451924(+)	partial			WP_011728059.1	nitroreductase family deazaflavin-dependent oxidoreductase	69.7	66.7	48.6
MGA_4996	LOCUS_47890	sequence1:5473655..5474752(+)	partial			WP_003407494.1	PE family protein	38.9	38.4	54.2
MGA_4998	LOCUS_47910	sequence1:5476699..5478204(-)	partial			WP_010886098.1	PecA family PE domain-processing aspartic protease	52.9	27.6	45.5
MGA_5021	LOCUS_48120	sequence1:5504841..5505539(+)	internal_stop_codon	5505537..5505539(+)		WP_003407443.1	glucose-6-phosphate dehydrogenase	100.0	44.6	87.5
MGA_5022	LOCUS_48130	sequence1:5505561..5506394(+)	internal_stop_codon	5505537..5505539(+)		WP_003407443.1	glucose-6-phosphate dehydrogenase	100.0	53.9	91.0
MGA_5026	LOCUS_48170	sequence1:5508639..5509769(+)	frameshift,internal_stop_codon	5509935..5509937(+),5509842..5509844(+)	5509766	WP_010886116.1	PE family protein	28.2	21.6	65.1
MGA_5031	LOCUS_48210	sequence1:5515399..5516127(-)	partial			WP_004406597.1	GntR family transcriptional regulator	74.8	76.3	26.6
MGA_5033	LOCUS_48220	sequence1:5518773..5519516(+)	partial			WP_003112951.1	APC family permease	91.9	48.7	47.6
MGA_5038	LOCUS_48270	sequence1:5525905..5526582(+)	partial			WP_010950543.1	hypothetical protein	42.7	41.1	46.9
MGA_5075	LOCUS_48640	sequence1:5567419..5567736(-)	internal_stop_codon	5567791..5567793(-),5567896..5567898(-)		WP_003898857.1	integration host factor, actinobacterial type	100.0	55.3	85.7
MGA_5087	LOCUS_48760	sequence1:5581552..5581821(-)	frameshift		5581856	WP_003900326.1	cytochrome b5 domain-containing protein	100.0	18.2	80.9
MGA_5088	LOCUS_48770	sequence1:5581842..5582942(-)	frameshift		5581856	WP_003900326.1	cytochrome b5 domain-containing protein	100.0	75.1	82.3
MGA_5093	LOCUS_48820	sequence1:5587633..5589303(-)	frameshift		5589364,5589502	WP_003899363.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	100.0	59.1	84.5
MGA_5110	LOCUS_48990	sequence1:5604043..5604552(+)	frameshift		5604026,5603927	WP_003413213.1	hypothetical protein	100.0	71.6	82.8
MGA_5112	LOCUS_49010	sequence1:5606147..5607253(+)	partial			WP_003899377.1	DUF2189 domain-containing protein	67.1	80.6	60.3
MGA_5113	LOCUS_49020	sequence1:5607407..5607733(+)	internal_stop_codon	5607731..5607733(+)		WP_010886150.1	transglutaminase family protein	99.1	9.4	83.2
MGA_5119	LOCUS_49080	sequence1:5616018..5616881(-)	frameshift		5616882	WP_003899381.1	aromatic acid exporter family protein	99.0	80.0	48.6
MGA_5120	LOCUS_49090	sequence1:5617106..5617291(-)	frameshift,internal_stop_codon	5617106..5617108(-)	5617319	WP_003894385.1	nitroreductase family deazaflavin-dependent oxidoreductase	100.0	40.4	57.4
MGA_5121	LOCUS_49100	sequence1:5617284..5617532(-)	frameshift,internal_stop_codon	5617106..5617108(-)	5617319	WP_003894385.1	nitroreductase family deazaflavin-dependent oxidoreductase	79.3	43.0	64.6
MGA_5138	LOCUS_49270	sequence1:5635484..5635966(-)	partial			WP_003413369.1	adenine phosphoribosyltransferase	99.4	71.3	67.3
MGA_5145	LOCUS_49340	sequence1:5646827..5647522(+)	frameshift,internal_stop_codon	5646928..5646930(+)	5647495,5647501,5647504,5647730,5647507,5647155,5647480,5647513,5647486	WP_010886165.1	PE family protein	51.5	7.7	52.1
MGA_5150	LOCUS_49390	sequence1:5650176..5651159(+)	partial			WP_010950748.1	PE family protein	45.0	26.7	61.2
MGA_5153	LOCUS_49410	sequence1:5652227..5653690(+)	partial			WP_010950748.1	PE family protein	31.2	27.7	60.5
MGA_5158	LOCUS_49460	sequence1:5656734..5656967(+)	partial			WP_003413444.1	DUF2617 family protein	97.4	43.9	72.0
MGA_5167	LOCUS_49530	sequence1:5668071..5669633(-)	partial			WP_010886117.1	PE family protein	26.5	10.4	62.3
MGA_5169	LOCUS_49540	sequence1:5671525..5671734(+)	partial			WP_010908097.1	PucR family transcriptional regulator	92.8	15.2	57.8
MGA_5171	LOCUS_49560	sequence1:5672780..5674576(+)	partial			WP_010886177.1	PE family protein	21.4	21.9	51.6
MGA_5194	LOCUS_49790	sequence1:5694406..5695083(-)	partial			WP_013225629.1	hypothetical protein	40.9	75.2	34.4
MGA_5201	LOCUS_49860	sequence1:5702989..5705298(-)	partial			WP_009938544.1	PE family protein	15.3	15.2	62.7
MGA_5203	LOCUS_49870	sequence1:5707522..5707983(+)	partial			WP_003899406.1	chloramphenicol phosphotransferase CPT family protein	98.0	66.7	82.7
MGA_5213	LOCUS_49970	sequence1:5714510..5715604(+)	frameshift		5715595	WP_010950755.1	ACR3 family arsenite efflux transporter	98.6	72.1	88.9
MGA_5214	LOCUS_49980	sequence1:5715601..5715906(+)	frameshift		5715595	WP_003413686.1	ACR3 family arsenite efflux transporter	72.3	14.7	82.2
MGA_5238	LOCUS_50200	sequence1:5740698..5741078(-)	frameshift,internal_stop_codon	5741137..5741139(-)	5741076	WP_003413891.1	1-deoxy-D-xylulose-5-phosphate synthase	98.4	19.6	80.8
MGA_5239	LOCUS_50210	sequence1:5741137..5741544(-)	frameshift,internal_stop_codon	5741137..5741139(-)	5741076	WP_003413891.1	1-deoxy-D-xylulose-5-phosphate synthase	100.0	21.2	88.1
MGA_5240	LOCUS_50220	sequence1:5742275..5743366(+)	frameshift		5743240,5743252,5743213	WP_003910308.1	PE family protein	30.3	19.6	50.9
MGA_5249	LOCUS_50300	sequence1:5752149..5752769(-)	internal_stop_codon	5752818..5752820(-)		WP_003413913.1	ABC transporter ATP-binding protein	100.0	68.4	80.6
MGA_5250	LOCUS_50310	sequence1:5752818..5753048(-)	internal_stop_codon	5752818..5752820(-)		WP_162139527.1	ABC transporter ATP-binding protein	88.2	22.7	74.6
MGA_5259	LOCUS_50400	sequence1:5760813..5761172(-)	partial			WP_003413930.1	dUTP diphosphatase	87.4	67.5	84.6
MGA_5266	LOCUS_50470	sequence1:5764948..5766453(+)	partial			WP_003413944.1	RNA polymerase sigma factor	71.1	67.6	94.7
MGA_5267	LOCUS_50480	sequence1:5766663..5768675(+)	partial			WP_004193152.1	T2SS-translocated chitinase	35.7	51.2	38.0
MGA_5277	LOCUS_50580	sequence1:5776121..5776942(-)	partial			WP_013223253.1	trypsin-like peptidase domain-containing protein	68.9	68.7	37.4
MGA_5293	LOCUS_50730	sequence1:5794204..5794584(-)	frameshift		5794588	WP_010950765.1	DMT family transporter	98.4	41.5	69.6
MGA_5295	LOCUS_50750	sequence1:5795567..5797372(+)	partial			WP_010950514.1	serine/threonine-protein kinase PknH/PknJ	73.0	66.8	52.6
MGA_5301	LOCUS_50810	sequence1:5802938..5803585(+)	frameshift,internal_stop_codon	5803584..5803586(+)	5803291,5803661,5803198	WP_011027474.1	(2Fe-2S)-binding protein	99.1	81.8	36.0
MGA_5329	LOCUS_51090	sequence1:5831352..5832260(-)	internal_stop_codon	5832267..5832269(-)		WP_011086825.1	class I adenylate-forming enzyme family protein	97.7	55.3	38.0
MGA_5331	LOCUS_51100	sequence1:5834116..5834574(-)	partial			WP_011228677.1	long-chain fatty acid--CoA ligase	78.9	21.7	40.8
MGA_5337	LOCUS_51160	sequence1:5839433..5839612(-)	internal_stop_codon	5839646..5839648(-)		WP_011727153.1	dihydrodipicolinate reductase	98.3	16.2	84.5
MGA_5338	LOCUS_51170	sequence1:5839646..5840521(-)	internal_stop_codon	5839646..5839648(-)		WP_011727153.1	dihydrodipicolinate reductase	97.9	79.4	86.0
MGA_5345	LOCUS_51240	sequence1:5846700..5847149(-)	internal_stop_codon	5847225..5847227(-)		WP_003899476.1	Lrp/AsnC family transcriptional regulator	99.3	82.7	87.8
MGA_5362	LOCUS_51410	sequence1:5863170..5864582(-)	frameshift		5864731	WP_003414155.1	alpha/beta hydrolase family protein	99.8	83.5	79.5
MGA_5363	LOCUS_51420	sequence1:5864597..5864857(-)	frameshift		5864731	WP_003414155.1	alpha/beta hydrolase family protein	48.8	7.5	81.0
MGA_5372	LOCUS_51510	sequence1:5873220..5874224(-)	internal_stop_codon	5874297..5874299(-)		WP_010950602.1	type VII secretion system ESX-5 target PPE26	100.0	83.7	51.2
MGA_5375	LOCUS_51540	sequence1:5875773..5876453(+)	partial			WP_189232996.1	NAD(P)/FAD-dependent oxidoreductase	96.9	64.2	47.7
MGA_5377	LOCUS_51560	sequence1:5877558..5877827(-)	partial			WP_010950783.1	ABC transporter substrate-binding protein	94.4	19.3	73.8
MGA_5384	LOCUS_51620	sequence1:5884606..5887434(-)	partial			WP_003899505.1	translation initiation factor IF-2	66.2	69.3	92.1
MGA_5399	LOCUS_51770	sequence1:5902752..5903984(-)	frameshift		5902789,5904041,5904101	WP_003406326.1	MFS transporter	97.1	68.4	55.0
MGA_5401	LOCUS_51790	sequence1:5905126..5906049(+)	frameshift		5906010,5906014	WP_010950405.1	siderophore RND transporter MmpL4	96.7	31.1	68.1
MGA_5402	LOCUS_51800	sequence1:5906130..5908064(+)	frameshift		5906017,5906010	WP_010950405.1	siderophore RND transporter MmpL4	95.5	63.7	75.5
MGA_5404	LOCUS_51810	sequence1:5912444..5912872(-)	partial			WP_003402304.1	hypothetical protein	55.6	81.4	53.2
