{ "type": "genome", "identifier": "GCF_002356495.1", "organism": "Mycobacterium ulcerans subsp. shinshuense", "title": "Mycobacterium ulcerans subsp. shinshuense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Infectious Diseases", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002356495.1", "bioproject": "PRJNA224116", "biosample": "SAMD00057810", "wgs_master": "na", "refseq_category": "na", "taxid": "1124626", "species_taxid": "1809", "organism_name": "Mycobacterium ulcerans subsp. shinshuense", "infraspecific_name": "strain=ATCC 33728", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/26", "asm_name": "ASM235649v1", "asm_submitter": "National Institute of Infectious Diseases", "gbrs_paired_asm": "GCA_002356495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/356/495/GCF_002356495.1_ASM235649v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5914588", "genome_size_ungapped": "5600834", "gc_percent": "66.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002356495.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5100", "protein_coding_gene_count": "4375", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-26", "dateModified": "2016-08-26", "datePublished": "2016-08-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium ulcerans subsp. shinshuense" ], "sample_taxid": [ "1124626" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Tokyo, Higashimurayama" ], "sample_host_location_id": [], "data_size": "1.560 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5914588", "Number of Sequences": "1", "Longest Sequences (bp)": "5914588", "N50 (bp)": "5914588", "Gap Ratio (%)": "5.304748", "GCcontent (%)": "65.8", "Number of CDSs": "5182", "Average Protein Length": "314.7", "Coding Ratio (%)": "82.7", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium pseudoshottsii", "strain": "strain=JCM 15466", "accession": "GCA_001515365.1", "taxid": 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