{ "type": "genome", "identifier": "GCF_002362295.1", "organism": "Burkholderia ubonensis subsp. mesacidophila", "title": "Burkholderia ubonensis subsp. mesacidophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Notre Dame", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002362295.1", "bioproject": "PRJNA224116", "biosample": "SAMN06231156", "wgs_master": "MTZU00000000.1", "refseq_category": "na", "taxid": "265293", "species_taxid": "101571", "organism_name": "Burkholderia ubonensis subsp. mesacidophila", "infraspecific_name": "strain=ATCC 31433", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/26", "asm_name": "ASM236229v1", "asm_submitter": "University of Notre Dame", "gbrs_paired_asm": "GCA_002362295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/362/295/GCF_002362295.1_ASM236229v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7750452", "genome_size_ungapped": "7750452", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "154", "contig_count": "154", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002362295.1-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "7214", "protein_coding_gene_count": "6955", "non_coding_gene_count": "69", "pubmed_id": "28937735" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-26", "dateModified": "2017-09-26", "datePublished": "2017-09-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia acidicola" ], "sample_taxid": [ "1912599" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "2.109 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7750452", "Number of Sequences": "154", "Longest Sequences (bp)": "295746", "N50 (bp)": "100069", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.1", "Number of CDSs": "6933", "Average Protein Length": "318.4", "Coding Ratio (%)": "85.5", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia ubonensis subsp. mesacidophila", "strain": "strain=ATCC 31433", "accession": "GCA_002362295.1", "taxid": 265293, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2500, "total_fragments": 2507, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia ubonensis subsp. mesacidophila", "strain": "strain=ATCC 31433", "accession": "GCA_002097715.1", "taxid": 265293, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 99.9973, "matched_fragments": 2505, "total_fragments": 2507, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 94.7964, "matched_fragments": 2050, "total_fragments": 2507, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, 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1641, "total_fragments": 2507, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia territorii", "strain": "strain=LMG 28158", "accession": "GCA_902833055.1", "taxid": 1503055, "species_taxid": 1503055, "relation_to_type": "type", "validated": true, "ani": 88.3119, "matched_fragments": 1584, "total_fragments": 2507, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 83.8864, "matched_fragments": 1316, "total_fragments": 2507, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 81.9393, "matched_fragments": 1112, "total_fragments": 2507, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia mineralivorans", "strain": "strain=PML1(12)", "accession": "GCA_001028175.1", "taxid": 2010198, "species_taxid": 2010198, "relation_to_type": "type", "validated": true, "ani": 78.968, "matched_fragments": 742, "total_fragments": 2507, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas horti", "strain": "strain=MAH-20", "accession": "GCA_009753715.1", "taxid": 2682842, "species_taxid": 2682842, "relation_to_type": "type", "validated": true, "ani": 75.2378, "matched_fragments": 188, "total_fragments": 2507, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002097715.1", "gtdb_species": "s__Burkholderia acidophila", "ani": 99.9973, "matched_fragments": 2505, "total_fragments": 2507, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Burkholderia", "ubonensis", "subsp.", "mesacidophila" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }