{ "type": "genome", "identifier": "GCF_002362315.1", "organism": "Paraburkholderia acidicola", "title": "Paraburkholderia acidicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Notre Dame", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002362315.1", "bioproject": "PRJNA224116", "biosample": "SAMN06246902", "wgs_master": "MTZV00000000.1", "refseq_category": "reference genome", "taxid": "1912599", "species_taxid": "1912599", "organism_name": "Paraburkholderia acidicola", "infraspecific_name": "strain=ATCC 31363", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/26", "asm_name": "ASM236231v1", "asm_submitter": "University of Notre Dame", "gbrs_paired_asm": "GCA_002362315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/362/315/GCF_002362315.1_ASM236231v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7170935", "genome_size_ungapped": "7170935", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002362315.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "6278", "protein_coding_gene_count": "6166", "non_coding_gene_count": "62", "pubmed_id": "28937735" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-26", "dateModified": "2017-09-26", "datePublished": "2017-09-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia acidicola" ], "sample_taxid": [ "1912599" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.991 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7170935", "Number of Sequences": "11", "Longest Sequences (bp)": "2868418", "N50 (bp)": "1743501", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "6196", "Average Protein Length": "336.4", "Coding Ratio (%)": "87.2", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia acidicola", "strain": "strain=ATCC 31363", "accession": "GCA_002362315.1", "taxid": 1912599, "species_taxid": 1912599, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2385, "total_fragments": 2385, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia megapolitana", "strain": "strain=LMG 23650", "accession": "GCA_900113825.1", "taxid": 420953, "species_taxid": 420953, "relation_to_type": "type", "validated": true, "ani": 92.6179, "matched_fragments": 2025, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia megapolitana", "strain": "strain=LMG 23650", "accession": "GCA_007556815.1", "taxid": 420953, "species_taxid": 420953, "relation_to_type": "type", "validated": true, "ani": 92.611, "matched_fragments": 2048, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia flava", "strain": "strain=LD6", "accession": "GCA_004359985.1", "taxid": 2547393, "species_taxid": 2547393, "relation_to_type": "type", "validated": true, "ani": 84.5535, "matched_fragments": 1464, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia sartisoli", "strain": "strain=LMG 24000", "accession": "GCA_900107685.1", "taxid": 83784, "species_taxid": 83784, "relation_to_type": "type", "validated": true, "ani": 82.5272, "matched_fragments": 1030, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia monticola", "strain": "strain=JC2948", "accession": "GCA_001580545.1", "taxid": 1399968, "species_taxid": 1399968, "relation_to_type": "type", "validated": true, "ani": 82.4105, "matched_fragments": 1126, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia lacunae", "strain": "strain=S27", "accession": "GCA_003353175.1", "taxid": 2211104, "species_taxid": 2211104, "relation_to_type": "type", "validated": true, "ani": 82.2778, "matched_fragments": 1131, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia gardini", "strain": "strain=LMG 32171", "accession": "GCA_907164575.1", "taxid": 2823469, "species_taxid": 2823469, "relation_to_type": "type", "validated": true, "ani": 82.2178, "matched_fragments": 1035, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 82.2066, "matched_fragments": 1116, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia saeva", "strain": "strain=LMG 31841", "accession": "GCA_907164555.1", "taxid": 2777537, "species_taxid": 2777537, "relation_to_type": "type", "validated": true, "ani": 82.1473, "matched_fragments": 1031, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ribeironis", "strain": 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