{ "type": "genome", "identifier": "GCF_002374315.1", "organism": "Vreelandella nigrificans", "title": "Vreelandella nigrificans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Max Rubner-Institut", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002374315.1", "bioproject": "PRJNA224116", "biosample": "SAMN07682383", "wgs_master": "NWUX00000000.1", "refseq_category": "reference genome", "taxid": "2042704", "species_taxid": "2042704", "organism_name": "Vreelandella nigrificans", "infraspecific_name": "strain=MBT G8648", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/26", "asm_name": "ASM237431v1", "asm_submitter": "Max Rubner-Institut", "gbrs_paired_asm": "GCA_002374315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/374/315/GCF_002374315.1_ASM237431v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4929385", "genome_size_ungapped": "4928541", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "84", "contig_count": "84", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002374315.1-RS_2024_04_08", "annotation_date": "2024-04-08", "total_gene_count": "4507", "protein_coding_gene_count": "4399", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-26", "dateModified": "2017-09-26", "datePublished": "2017-09-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Vreelandella nigrificans" ], "sample_taxid": [ "2042704" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Kiel" ], "sample_host_location_id": [], "data_size": "1.413 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4929385", "Number of Sequences": "84", "Longest Sequences (bp)": "660682", "N50 (bp)": "184686", "Gap Ratio (%)": "0.017122", "GCcontent (%)": "52.8", "Number of CDSs": "4371", "Average Protein Length": "327.8", "Coding Ratio (%)": "87.2", "Number of rRNAs": "2", "Number of tRNAs": "56", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas nigrificans", "strain": "strain=MBT G8648", "accession": "GCA_002374315.1", "taxid": 2042704, "species_taxid": 2042704, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1604, "total_fragments": 1606, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas humidisoli", "strain": "strain=WN018", "accession": "GCA_002286955.1", "taxid": 2032624, "species_taxid": 2032624, "relation_to_type": "type", "validated": true, "ani": 81.2583, "matched_fragments": 713, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zhaodongensis", "strain": "strain=NEAU-ST10-25", "accession": "GCA_013415115.1", "taxid": 1176240, "species_taxid": 1176240, "relation_to_type": "type", "validated": true, "ani": 81.1524, "matched_fragments": 711, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alkaliphila", "strain": "strain=DSM 16354", "accession": "GCA_016107625.1", "taxid": 272774, "species_taxid": 272774, "relation_to_type": "type", "validated": true, "ani": 80.9902, "matched_fragments": 707, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas titanicae", "strain": "strain=BH1", "accession": "GCA_000336575.1", "taxid": 664683, "species_taxid": 664683, "relation_to_type": "type", "validated": true, "ani": 80.4687, "matched_fragments": 680, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sedimenti", "strain": "strain=QX-2", "accession": "GCA_013416325.1", "taxid": 2729618, "species_taxid": 2729618, "relation_to_type": "type", "validated": true, "ani": 80.2308, "matched_fragments": 620, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lutescens", "strain": "strain=CGMCC 1.15122", "accession": "GCA_014640815.1", "taxid": 1602943, "species_taxid": 1602943, "relation_to_type": "type", "validated": true, "ani": 80.1914, "matched_fragments": 609, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aquamarina", "strain": "strain=558", "accession": "GCA_900110265.1", "taxid": 77097, "species_taxid": 77097, "relation_to_type": "type", "validated": true, "ani": 80.1378, "matched_fragments": 568, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas glaciei", "strain": "strain=DD39", "accession": "GCA_013415125.1", "taxid": 186761, "species_taxid": 186761, "relation_to_type": "type", "validated": true, "ani": 80.0082, "matched_fragments": 587, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas meridiana", "strain": "strain=ACAM 246", "accession": "GCA_900129255.1", "taxid": 29570, "species_taxid": 29570, "relation_to_type": "type", "validated": true, "ani": 79.9632, "matched_fragments": 560, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lionensis", "strain": "strain=RHS90", "accession": "GCA_002087295.1", "taxid": 1144478, "species_taxid": 1144478, 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