{
    "type": "genome",
    "identifier": "GCF_002374835.1",
    "organism": "Sphingomonas ginsenosidimutans",
    "title": "Sphingomonas ginsenosidimutans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Guangdong Institute of Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002374835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07655733",
        "wgs_master": "NWVD00000000.1",
        "refseq_category": "reference genome",
        "taxid": "862134",
        "species_taxid": "862134",
        "organism_name": "Sphingomonas ginsenosidimutans",
        "infraspecific_name": "strain=KACC 14949",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/27",
        "asm_name": "ASM237483v1",
        "asm_submitter": "Guangdong Institute of Microbiology",
        "gbrs_paired_asm": "GCA_002374835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/374/835/GCF_002374835.1_ASM237483v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3900947",
        "genome_size_ungapped": "3900947",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "57",
        "contig_count": "57",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002374835.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "3818",
        "protein_coding_gene_count": "3706",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-27",
    "dateModified": "2017-09-27",
    "datePublished": "2017-09-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingomonas ginsenosidimutans"
        ],
        "sample_taxid": [
            "862134"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Pocheon province"
        ],
        "sample_host_location_id": [],
        "data_size": "1.050 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3900947",
        "Number of Sequences": "57",
        "Longest Sequences (bp)": "1195914",
        "N50 (bp)": "467260",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.8",
        "Number of CDSs": "3702",
        "Average Protein Length": "322.2",
        "Coding Ratio (%)": "91.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sphingomonas ginsenosidimutans",
                "strain": "strain=KACC 14949",
                "accession": "GCA_002374835.1",
                "taxid": 862134,
                "species_taxid": 862134,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1271,
                "total_fragments": 1272,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingomonas adhaesiva",
                "strain": "strain=DSM 7418",
                "accession": "GCA_002374855.1",
                "taxid": 28212,
                "species_taxid": 28212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8373,
                "matched_fragments": 1023,
                "total_fragments": 1272,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas adhaesiva",
                "strain": "strain=NBRC 15099",
                "accession": "GCA_001592345.1",
                "taxid": 28212,
                "species_taxid": 28212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.5978,
                "matched_fragments": 784,
                "total_fragments": 1272,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas endophytica",
                "strain": "strain=DSM 101535",
                "accession": "GCA_014199415.1",
                "taxid": 869719,
                "species_taxid": 869719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9658,
                "matched_fragments": 731,
                "total_fragments": 1272,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas phyllosphaerae",
                "strain": "strain=FA2",
                "accession": "GCA_000427645.1",
                "taxid": 257003,
                "species_taxid": 257003,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7001,
                "matched_fragments": 709,
                "total_fragments": 1272,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas corticis",
                "strain": "strain=36D10-4-7",
                "accession": "GCA_012035195.1",
                "taxid": 2722791,
                "species_taxid": 2722791,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.669,
                "matched_fragments": 759,
                "total_fragments": 1272,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas folli",
                "strain": "strain=RHCKR7",
                "accession": "GCA_019429525.1",
                "taxid": 2862497,
                "species_taxid": 2862497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4326,
                "matched_fragments": 739,
                "total_fragments": 1272,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas citri",
                "strain": "strain=RRHST34",
                "accession": "GCA_019429485.1",
                "taxid": 2862499,
                "species_taxid": 2862499,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1741,
                "matched_fragments": 743,
                "total_fragments": 1272,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas yunnanensis",
                "strain": "strain=YIM 3",
                "accession": "GCA_019898765.1",
                "taxid": 310400,
                "species_taxid": 310400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0257,
                "matched_fragments": 709,
                "total_fragments": 1272,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas panni",
                "strain": "strain=DSM 15761",
                "accession": "GCA_022664435.1",
                "taxid": 237612,
                "species_taxid": 237612,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9498,
                "matched_fragments": 602,
                "total_fragments": 1272,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002374835.1",
                "gtdb_species": "s__Sphingomonas ginsenosidimutans",
                "ani": 100.0,
                "matched_fragments": 1271,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "98.43",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002374855.1",
                "gtdb_species": "s__Sphingomonas adhaesiva",
                "ani": 92.8373,
                "matched_fragments": 1023,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003243195.1",
                "gtdb_species": "s__Sphingomonas taxi_B",
                "ani": 83.8296,
                "matched_fragments": 733,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001476895.1",
                "gtdb_species": "s__Sphingomonas endophytica_A",
                "ani": 83.422,
                "matched_fragments": 693,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014199415.1",
                "gtdb_species": "s__Sphingomonas endophytica",
                "ani": 82.9656,
                "matched_fragments": 732,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.00",
                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000427645.1",
                "gtdb_species": "s__Sphingomonas phyllosphaerae",
                "ani": 82.6622,
                "matched_fragments": 712,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012035195.1",
                "gtdb_species": "s__Sphingomonas sp012035195",
                "ani": 82.622,
                "matched_fragments": 763,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004345855.1",
                "gtdb_species": "s__Sphingomonas sp004345855",
                "ani": 82.592,
                "matched_fragments": 744,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902506455.1",
                "gtdb_species": "s__Sphingomonas sp902506455",
                "ani": 82.5019,
                "matched_fragments": 704,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001421995.1",
                "gtdb_species": "s__Sphingomonas sp001421995",
                "ani": 82.4287,
                "matched_fragments": 698,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014194975.1",
                "gtdb_species": "s__Sphingomonas sp014194975",
                "ani": 82.286,
                "matched_fragments": 737,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000419605.1",
                "gtdb_species": "s__Sphingomonas phyllosphaerae_B",
                "ani": 82.2419,
                "matched_fragments": 685,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014193845.1",
                "gtdb_species": "s__Sphingomonas sp014193845",
                "ani": 82.134,
                "matched_fragments": 734,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.90",
                "min_intra_species_ani": "98.90",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014217605.1",
                "gtdb_species": "s__Sphingomonas sp014217605",
                "ani": 80.9333,
                "matched_fragments": 606,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002117915.1",
                "gtdb_species": "s__Sphingomonas sp002117915",
                "ani": 80.8314,
                "matched_fragments": 629,
                "total_fragments": 1272,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.288,
        "cell_length": 0.14,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 28.407,
        "optimum_ph": 7.016,
        "genome_size": 4164406.103,
        "gc_content": 66.116,
        "coding_genes": 4592.69,
        "rRNA16S_genes": 2.285,
        "tRNA_genes": 51.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.586,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.98,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.019
    },
    "_genome_taxon": [
        "Sphingomonas",
        "ginsenosidimutans"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}