{ "type": "genome", "identifier": "GCF_002441695.1", "organism": "Lactococcus piscium", "title": "Lactococcus piscium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inner Mongolia Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002441695.1", "bioproject": "PRJNA224116", "biosample": "SAMN03267152", "wgs_master": "JXJW00000000.1", "refseq_category": "reference genome", "taxid": "1364", "species_taxid": "1364", "organism_name": "Lactococcus piscium", "infraspecific_name": "strain=DSM 6634", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/04", "asm_name": "ASM244169v1", "asm_submitter": "Inner Mongolia Agricultural University", "gbrs_paired_asm": "GCA_002441695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/441/695/GCF_002441695.1_ASM244169v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2405003", "genome_size_ungapped": "2404816", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002441695.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2385", "protein_coding_gene_count": "2289", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-04", "dateModified": "2017-10-04", "datePublished": "2017-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactococcus piscium" ], "sample_taxid": [ "1364" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"total_fragments": 770, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactococcus carnosus", "strain": "strain=TMW 2.1612", "accession": "GCA_006770265.1", "taxid": 2749961, "species_taxid": 2749961, "relation_to_type": "type", "validated": true, "ani": 94.704, "matched_fragments": 609, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus paracarnosus", "strain": "strain=TMW 2.1615", "accession": "GCA_006770285.1", "taxid": 2749962, "species_taxid": 2749962, "relation_to_type": "type", "validated": true, "ani": 92.7684, "matched_fragments": 626, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus raffinolactis", "strain": "strain=ATCC 43920", "accession": "GCA_002441745.1", "taxid": 1366, "species_taxid": 1366, "relation_to_type": "type", "validated": true, "ani": 80.0727, "matched_fragments": 249, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus plantarum", "strain": "strain=DSM 20686", "accession": "GCA_002441715.1", "taxid": 1365, "species_taxid": 1365, "relation_to_type": "type", "validated": true, "ani": 79.9935, "matched_fragments": 317, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus laudensis", "strain": "strain=LMG 28353", "accession": "GCA_019586025.1", "taxid": 1494461, "species_taxid": 1494461, "relation_to_type": "type", "validated": true, "ani": 79.8443, "matched_fragments": 256, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus chungangensis", "strain": "strain=DSM 22330", "accession": "GCA_900119835.1", "taxid": 451457, "species_taxid": 451457, "relation_to_type": "type", "validated": true, "ani": 79.7306, "matched_fragments": 237, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.24", "min_intra_species_ani": "98.46", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001591765.1", "gtdb_species": "s__Lactococcus_A raffinolactis", "ani": 79.7443, "matched_fragments": 245, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "98.57", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_011170065.1", "gtdb_species": "s__Lactococcus_A insecticola", "ani": 78.8041, "matched_fragments": 152, "total_fragments": 770, "gtdb_taxonomy": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lactococcus", "piscium" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }