{
    "type": "genome",
    "identifier": "GCF_002441785.1",
    "organism": "Lactococcus lactis subsp. hordniae",
    "title": "Lactococcus lactis subsp. hordniae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Inner Mongolia Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002441785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03267156",
        "wgs_master": "JXKA00000000.1",
        "refseq_category": "na",
        "taxid": "203404",
        "species_taxid": "1358",
        "organism_name": "Lactococcus lactis subsp. hordniae",
        "infraspecific_name": "strain=DSM 20450",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/10/04",
        "asm_name": "ASM244178v1",
        "asm_submitter": "Inner Mongolia Agricultural University",
        "gbrs_paired_asm": "GCA_002441785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/441/785/GCF_002441785.1_ASM244178v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2431289",
        "genome_size_ungapped": "2431289",
        "gc_percent": "35.000000",
        "replicon_count": "0",
        "scaffold_count": "101",
        "contig_count": "101",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002441785.1-RS_2024_08_22",
        "annotation_date": "2024-08-22",
        "total_gene_count": "2551",
        "protein_coding_gene_count": "2269",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-10-04",
    "dateModified": "2017-10-04",
    "datePublished": "2017-10-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactococcus lactis subsp. hordniae"
        ],
        "sample_taxid": [
            "203404"
        ],
        "sample_host_organism": [
            "leafhopper"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.684 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2431289",
        "Number of Sequences": "101",
        "Longest Sequences (bp)": "149726",
        "N50 (bp)": "76584",
        "Gap Ratio (%)": "0.000329",
        "GCcontent (%)": "34.8",
        "Number of CDSs": "2619",
        "Average Protein Length": "261.4",
        "Coding Ratio (%)": "84.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lactococcus lactis subsp. hordniae",
                "strain": "strain=DSM 20450",
                "accession": "GCA_002441785.1",
                "taxid": 203404,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 767,
                "total_fragments": 769,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. hordniae",
                "strain": "strain=NBRC 100931",
                "accession": "GCA_001591725.1",
                "taxid": 203404,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9921,
                "matched_fragments": 741,
                "total_fragments": 769,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. hordniae",
                "strain": "strain=CCUG 32210T",
                "accession": "GCA_008692945.1",
                "taxid": 203404,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9904,
                "matched_fragments": 765,
                "total_fragments": 769,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. lactis",
                "strain": "strain=ATCC 19435",
                "accession": "GCA_001456385.1",
                "taxid": 1360,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.3167,
                "matched_fragments": 624,
                "total_fragments": 769,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. lactis",
                "strain": "strain=ATCC 19435",
                "accession": "GCA_004354485.1",
                "taxid": 1360,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1939,
                "matched_fragments": 642,
                "total_fragments": 769,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus formosensis subsp. bovis",
                "strain": "strain=LMG 30663",
                "accession": "GCA_018403725.1",
                "taxid": 1850438,
                "species_taxid": 1281486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5323,
                "matched_fragments": 132,
                "total_fragments": 769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus paracarnosus",
                "strain": "strain=TMW 2.1615",
                "accession": "GCA_006770285.1",
                "taxid": 2749962,
                "species_taxid": 2749962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1247,
                "matched_fragments": 56,
                "total_fragments": 769,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900099625.1",
                "gtdb_species": "s__Lactococcus lactis",
                "ani": 97.1968,
                "matched_fragments": 633,
                "total_fragments": 769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.03",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 223,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001591705.1",
                "gtdb_species": "s__Lactococcus cremoris",
                "ani": 87.4336,
                "matched_fragments": 546,
                "total_fragments": 769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "97.45",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 70,
                "status": "-"
            },
            {
                "accession": "GCF_014905395.1",
                "gtdb_species": "s__Lactococcus taiwanensis",
                "ani": 84.4666,
                "matched_fragments": 323,
                "total_fragments": 769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_004210295.1",
                "gtdb_species": "s__Lactococcus sp004210295",
                "ani": 81.3195,
                "matched_fragments": 338,
                "total_fragments": 769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003627095.1",
                "gtdb_species": "s__Lactococcus allomyrinae",
                "ani": 79.0681,
                "matched_fragments": 306,
                "total_fragments": 769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006965445.1",
                "gtdb_species": "s__Lactococcus sp006965445",
                "ani": 79.0191,
                "matched_fragments": 307,
                "total_fragments": 769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009601015.1",
                "gtdb_species": "s__Lactococcus hircilactis",
                "ani": 78.8855,
                "matched_fragments": 156,
                "total_fragments": 769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018403745.1",
                "gtdb_species": "s__Lactococcus formosensis",
                "ani": 78.6434,
                "matched_fragments": 134,
                "total_fragments": 769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_009601055.1",
                "gtdb_species": "s__Lactococcus sp009601055",
                "ani": 78.3978,
                "matched_fragments": 146,
                "total_fragments": 769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900101445.1",
                "gtdb_species": "s__Streptococcus equinus_B",
                "ani": 77.8466,
                "matched_fragments": 58,
                "total_fragments": 769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.02",
                "min_intra_species_ani": "95.22",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_018403765.1",
                "gtdb_species": "s__Lactococcus nasutitermitis",
                "ani": 77.7682,
                "matched_fragments": 175,
                "total_fragments": 769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": -0.302,
        "doubling_h": -0.248,
        "growth_tmp": 30.5,
        "optimum_tmp": 33.611,
        "optimum_ph": 6.6,
        "genome_size": 2522977.682,
        "gc_content": 35.057,
        "coding_genes": 2355.8,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 63.189,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Lactococcus",
        "lactis",
        "subsp.",
        "hordniae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}