{ "type": "genome", "identifier": "GCF_002499975.2", "organism": "Alteromonas pelagimontana", "title": "Alteromonas pelagimontana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "NCAOR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002499975.2", "bioproject": "PRJNA224116", "biosample": "SAMN06924978", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1858656", "species_taxid": "1858656", "organism_name": "Alteromonas pelagimontana", "infraspecific_name": "strain=5.12", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/11", "asm_name": "ASM249997v2", "asm_submitter": "NCAOR", "gbrs_paired_asm": "GCA_002499975.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/499/975/GCF_002499975.2_ASM249997v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4314189", "genome_size_ungapped": "4314189", "gc_percent": "46.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002499975.2-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3800", "protein_coding_gene_count": "3693", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-11", "dateModified": "2020-05-11", "datePublished": "2020-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas pelagimontana" ], "sample_taxid": [ "1858656" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "1.232 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 54035.0, "max": 54035.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4314189", "Number of Sequences": "1", "Longest Sequences (bp)": "4314189", "N50 (bp)": "4314189", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.1", "Number of CDSs": "3727", "Average Protein Length": "332.6", "Coding Ratio (%)": "86.2", "Number of rRNAs": "12", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas pelagimontana", "strain": "strain=5.12", "accession": "GCA_002499975.2", "taxid": 1858656, "species_taxid": 1858656, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1435, "total_fragments": 1438, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salinimonas iocasae", "strain": "strain=KX18D6", "accession": "GCA_006228385.1", "taxid": 2572577, "species_taxid": 2572577, "relation_to_type": "type", "validated": true, "ani": 79.0233, "matched_fragments": 172, "total_fragments": 1438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas oceani", "strain": "strain=S35", "accession": "GCA_003731635.1", "taxid": 2071609, "species_taxid": 2071609, "relation_to_type": "type", "validated": true, "ani": 78.7569, "matched_fragments": 143, "total_fragments": 1438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas alba", "strain": "strain=190", "accession": "GCA_002993365.1", "taxid": 2079529, "species_taxid": 2079529, "relation_to_type": "type", "validated": true, "ani": 78.4695, "matched_fragments": 146, "total_fragments": 1438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas hispanica", "strain": "strain=LMG 22958", 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