{ "type": "genome", "identifier": "GCF_002563695.1", "organism": "Georgenia soli", "title": "Georgenia soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002563695.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488547", "wgs_master": "PDJI00000000.1", "refseq_category": "reference genome", "taxid": "638953", "species_taxid": "638953", "organism_name": "Georgenia soli", "infraspecific_name": "strain=DSM 21838", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/17", "asm_name": "ASM256369v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_002563695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/563/695/GCF_002563695.1_ASM256369v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4273660", "genome_size_ungapped": "4273660", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002563695.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3903", "protein_coding_gene_count": "3808", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-17", "dateModified": "2017-10-17", "datePublished": "2017-10-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Georgenia soli" ], "sample_taxid": [ "638953" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.129 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4273660", "Number of Sequences": "4", "Longest Sequences (bp)": "3974700", "N50 (bp)": "3974700", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.7", "Number of CDSs": "3888", "Average Protein Length": "330.1", "Coding Ratio (%)": "90.1", "Number of rRNAs": "9", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Georgenia soli", "strain": "strain=DSM 21838", "accession": "GCA_002563695.1", "taxid": 638953, "species_taxid": 638953, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1421, "total_fragments": 1422, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Georgenia thermotolerans", "strain": "strain=NBRC 104148", "accession": "GCA_009193185.1", "taxid": 527326, "species_taxid": 527326, "relation_to_type": "type", "validated": true, "ani": 82.1615, "matched_fragments": 814, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia subflava", "strain": "strain=JCM 19765", "accession": "GCA_009362315.1", "taxid": 1622177, "species_taxid": 1622177, "relation_to_type": "type", "validated": true, "ani": 82.1301, "matched_fragments": 757, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia subflava", "strain": "strain=CGMCC 1.12782", "accession": "GCA_009193155.1", "taxid": 1622177, "species_taxid": 1622177, "relation_to_type": "type", "validated": true, "ani": 82.0744, "matched_fragments": 812, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia thermotolerans", "strain": "strain=DSM 21501", "accession": "GCA_009299305.1", "taxid": 527326, "species_taxid": 527326, "relation_to_type": "type", "validated": true, "ani": 81.9998, "matched_fragments": 767, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia ruanii", "strain": "strain=JCM 15130", "accession": "GCA_009193175.1", "taxid": 348442, "species_taxid": 348442, "relation_to_type": "type", "validated": true, "ani": 81.819, "matched_fragments": 786, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia yuyongxinii", "strain": "strain=Z443", "accession": "GCA_006352065.1", "taxid": 2589797, "species_taxid": 2589797, "relation_to_type": "type", "validated": true, "ani": 81.416, "matched_fragments": 710, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia muralis", "strain": "strain=DSM 14418", "accession": "GCA_003814705.1", "taxid": 154117, "species_taxid": 154117, "relation_to_type": "type", "validated": true, "ani": 81.2809, "matched_fragments": 710, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanitalea stevensii", "strain": "strain=Sa1BUA1", "accession": "GCA_014837105.1", "taxid": 2763072, "species_taxid": 2763072, "relation_to_type": "type", "validated": true, "ani": 79.7612, "matched_fragments": 576, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia wutianyii", "strain": "strain=Z294", "accession": "GCA_006349365.1", "taxid": 2585135, "species_taxid": 2585135, "relation_to_type": "type", "validated": true, "ani": 79.7215, "matched_fragments": 564, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia faecalis", "strain": "strain=ZLJ0423", "accession": "GCA_003710105.1", "taxid": 2483799, "species_taxid": 2483799, "relation_to_type": "type", "validated": true, "ani": 79.6619, "matched_fragments": 555, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania suaedae", "strain": "strain=LR1S40", "accession": "GCA_021049265.1", "taxid": 2897774, "species_taxid": 2897774, "relation_to_type": "type", "validated": true, "ani": 77.8757, "matched_fragments": 379, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella glacieicola", "strain": "strain=T3246-1", "accession": "GCA_004353825.1", "taxid": 2518684, "species_taxid": 2518684, "relation_to_type": "type", "validated": true, "ani": 77.5617, "matched_fragments": 484, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002563695.1", "gtdb_species": "s__Georgenia soli", "ani": 100.0, "matched_fragments": 1419, "total_fragments": 1422, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009193185.1", "gtdb_species": "s__Georgenia thermotolerans", "ani": 82.1349, "matched_fragments": 817, "total_fragments": 1422, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009193155.1", "gtdb_species": "s__Georgenia subflava", "ani": 82.0135, "matched_fragments": 818, "total_fragments": 1422, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009193175.1", "gtdb_species": "s__Georgenia ruanii", "ani": 81.8465, "matched_fragments": 783, "total_fragments": 1422, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006352065.1", "gtdb_species": "s__Georgenia sp006352065", "ani": 81.4492, "matched_fragments": 709, "total_fragments": 1422, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.59", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003814705.1", "gtdb_species": "s__Georgenia muralis", "ani": 81.3342, "matched_fragments": 711, "total_fragments": 1422, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003991205.1", "gtdb_species": "s__Georgenia sp003991205", "ani": 81.2935, "matched_fragments": 739, "total_fragments": 1422, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006349365.1", "gtdb_species": "s__Oceanitalea sp006349365", "ani": 79.7174, "matched_fragments": 572, "total_fragments": 1422, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Oceanitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.20", "min_intra_species_ani": "99.20", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003710105.1", "gtdb_species": "s__Georgenia_A faecalis", "ani": 79.6631, "matched_fragments": 554, "total_fragments": 1422, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "99.15", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.051, "cell_length": 0.096, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 27.5, "optimum_ph": 7.541, "genome_size": 4273660.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Georgenia", "soli" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }