{ "type": "genome", "identifier": "GCF_002564005.1", "organism": "Sanguibacter antarcticus", "title": "Sanguibacter antarcticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002564005.1", "bioproject": "PRJNA224116", "biosample": "SAMN04490249", "wgs_master": "PDJG00000000.1", "refseq_category": "reference genome", "taxid": "372484", "species_taxid": "372484", "organism_name": "Sanguibacter antarcticus", "infraspecific_name": "strain=DSM 18966", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/17", "asm_name": "ASM256400v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_002564005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/564/005/GCF_002564005.1_ASM256400v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3521501", "genome_size_ungapped": "3521501", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002564005.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3239", "protein_coding_gene_count": "3141", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-17", "dateModified": "2017-10-17", "datePublished": "2017-10-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Sanguibacter antarcticus" ], "sample_taxid": [ "372484" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.946 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3521501", "Number of Sequences": "1", "Longest Sequences (bp)": "3521501", "N50 (bp)": "3521501", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.2", "Number of CDSs": "3212", "Average Protein Length": "332.2", "Coding Ratio (%)": "90.9", "Number of rRNAs": "9", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sanguibacter antarcticus", "strain": "strain=DSM 18966", "accession": "GCA_002564005.1", "taxid": 372484, "species_taxid": 372484, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1170, "total_fragments": 1173, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sanguibacter suaedae", "strain": "strain=YZGR15", "accession": "GCA_016342785.1", "taxid": 2795737, "species_taxid": 2795737, "relation_to_type": "type", "validated": true, "ani": 80.6733, "matched_fragments": 601, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter keddieii", "strain": "strain=DSM 10542", "accession": "GCA_000024925.1", "taxid": 60920, "species_taxid": 60920, "relation_to_type": "type", "validated": true, "ani": 80.6381, "matched_fragments": 587, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter suarezii", "strain": "strain=NBRC 16159", "accession": "GCA_001552735.1", "taxid": 60921, "species_taxid": 60921, "relation_to_type": "type", "validated": true, "ani": 80.3703, "matched_fragments": 572, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter gelidistatuariae", "strain": "strain=ISLP-3", "accession": "GCA_900096585.1", "taxid": 1814289, "species_taxid": 1814289, "relation_to_type": "type", "validated": true, "ani": 80.342, "matched_fragments": 615, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter inulinus", "strain": "strain=DSM 100099", "accession": "GCA_013415325.1", "taxid": 60922, "species_taxid": 60922, "relation_to_type": "type", "validated": true, "ani": 80.3125, "matched_fragments": 576, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia enterophila", "strain": "strain=DSM 43852", "accession": "GCA_001692445.1", "taxid": 43678, "species_taxid": 43678, "relation_to_type": "type", "validated": true, "ani": 79.2679, "matched_fragments": 463, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 79.1695, "matched_fragments": 466, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 79.0117, "matched_fragments": 487, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 78.976, "matched_fragments": 480, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9315, "matched_fragments": 507, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=DSM 25478", "accession": "GCA_002797595.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 78.8224, "matched_fragments": 471, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=NBRC 108568", "accession": "GCA_016863455.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 78.8211, "matched_fragments": 465, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=NBRC 3753", "accession": "GCA_006538745.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 78.6148, "matched_fragments": 512, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=DSM 20118", "accession": "GCA_000767135.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 78.5844, "matched_fragments": 433, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 78.4048, "matched_fragments": 443, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 78.3973, "matched_fragments": 451, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002564005.1", "gtdb_species": "s__Sanguibacter antarcticus", "ani": 100.0, "matched_fragments": 1170, "total_fragments": 1173, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016342785.1", "gtdb_species": "s__Sanguibacter sp016342785", "ani": 80.6907, "matched_fragments": 599, "total_fragments": 1173, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Sanguibacter", "antarcticus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }