{ "type": "genome", "identifier": "GCF_002564065.1", "organism": "Saccharopolyspora erythraea NRRL 2338", "title": "Saccharopolyspora erythraea NRRL 2338", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002564065.1", "bioproject": "PRJNA224116", "biosample": "SAMN05192572", "wgs_master": "PDBV00000000.1", "refseq_category": "na", "taxid": "405948", "species_taxid": "1836", "organism_name": "Saccharopolyspora erythraea NRRL 2338", "infraspecific_name": "strain=DSM 40517", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/17", "asm_name": "ASM256406v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_002564065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/564/065/GCF_002564065.1_ASM256406v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8230103", "genome_size_ungapped": "8230103", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002564065.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "7337", "protein_coding_gene_count": "7135", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-17", "dateModified": "2017-10-17", "datePublished": "2017-10-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharopolyspora erythraea NRRL 2338" ], "sample_taxid": [ "405948" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.195 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8230103", "Number of Sequences": "1", "Longest Sequences (bp)": "8230103", "N50 (bp)": "8230103", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.1", "Number of CDSs": "7468", "Average Protein Length": "318.7", "Coding Ratio (%)": "86.8", "Number of rRNAs": "12", "Number of tRNAs": "71", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=DSM 40517", "accession": "GCA_002564065.1", "taxid": 1836, "species_taxid": 1836, 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"matched_fragments": 1272, "total_fragments": 2743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora hirsuta", "strain": "strain=VKM Ac-666", "accession": "GCA_008630535.1", "taxid": 1837, "species_taxid": 1837, "relation_to_type": "type", "validated": true, "ani": 82.5384, "matched_fragments": 1462, "total_fragments": 2743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora subtropica", "strain": "strain=CGMCC 4.7206", "accession": "GCA_014646075.1", "taxid": 1530170, "species_taxid": 1530170, "relation_to_type": "type", "validated": true, "ani": 82.1952, "matched_fragments": 1202, "total_fragments": 2743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora antimicrobica", "strain": "strain=DSM 45119", "accession": "GCA_003635025.1", "taxid": 455193, "species_taxid": 455193, "relation_to_type": "type", "validated": true, "ani": 82.1206, "matched_fragments": 1426, 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