{
    "type": "genome",
    "identifier": "GCF_002583405.1",
    "organism": "Secundilactobacillus silagincola",
    "title": "Secundilactobacillus silagincola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "NARO Institute of Livestock and Grassland Science",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002583405.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00042399",
        "wgs_master": "BCMJ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1714681",
        "species_taxid": "1714681",
        "organism_name": "Secundilactobacillus silagincola",
        "infraspecific_name": "strain=IWT5",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/10/03",
        "asm_name": "ASM258340v1",
        "asm_submitter": "NARO Institute of Livestock and Grassland Science",
        "gbrs_paired_asm": "GCA_002583405.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/583/405/GCF_002583405.1_ASM258340v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2617693",
        "genome_size_ungapped": "2617408",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "86",
        "contig_count": "86",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002583405.1-RS_2024_08_12",
        "annotation_date": "2024-08-12",
        "total_gene_count": "2499",
        "protein_coding_gene_count": "2377",
        "non_coding_gene_count": "105",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-10-03",
    "dateModified": "2017-10-03",
    "datePublished": "2017-10-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Secundilactobacillus silagincola"
        ],
        "sample_taxid": [
            "1714681"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Iwate"
        ],
        "sample_host_location_id": [],
        "data_size": "0.744 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2617693",
        "Number of Sequences": "86",
        "Longest Sequences (bp)": "434694",
        "N50 (bp)": "287094",
        "Gap Ratio (%)": "0.010887",
        "GCcontent (%)": "43.1",
        "Number of CDSs": "2359",
        "Average Protein Length": "313.8",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Secundilactobacillus silagincola",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 853,
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            {
                "organism_name": "Secundilactobacillus yichangensis",
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                "species_taxid": 2799580,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Secundilactobacillus angelensis",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus mixtipabuli",
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                "taxid": 1435342,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 529,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus pentosiphilus",
                "strain": "strain=IWT25",
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                "species_taxid": 1714682,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1188,
                "matched_fragments": 506,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus silagei",
                "strain": "strain=IWT126",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus silagei",
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                "accession": "GCA_001313225.1",
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                "ani": 81.5864,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus silagei",
                "strain": "strain=DSM 27022",
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            },
            {
                "organism_name": "Secundilactobacillus hailunensis",
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            {
                "organism_name": "Secundilactobacillus folii",
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            },
            {
                "organism_name": "Paucilactobacillus hokkaidonensis",
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                "accession": "GCA_001311505.1",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Lentilactobacillus senioris",
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                "accession": "GCA_001312065.1",
                "taxid": 931534,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 77.344,
                "matched_fragments": 52,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lentilactobacillus otakiensis",
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                "accession": "GCA_001311395.1",
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_002583405.1",
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    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}