{ "type": "genome", "identifier": "GCF_002591975.1", "organism": "Mycobacterium neglectum", "title": "Mycobacterium neglectum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northumbria University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002591975.1", "bioproject": "PRJNA224116", "biosample": "SAMN07606483", "wgs_master": "NVQE00000000.1", "refseq_category": "reference genome", "taxid": "242737", "species_taxid": "242737", "organism_name": "Mycobacterium neglectum", "infraspecific_name": "strain=CECT 8778", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/19", "asm_name": "ASM259197v1", "asm_submitter": "Northumbria University", "gbrs_paired_asm": "GCA_002591975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/591/975/GCF_002591975.1_ASM259197v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6209311", "genome_size_ungapped": "6209311", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "123", "contig_count": "123", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002591975.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "6119", "protein_coding_gene_count": "5940", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-19", "dateModified": "2017-10-19", "datePublished": "2017-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium neglectum" ], "sample_taxid": [ "242737" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.727 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6209311", "Number of Sequences": "123", "Longest Sequences (bp)": "399264", "N50 (bp)": "116368", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "6030", "Average Protein Length": "316.1", "Coding Ratio (%)": "92.1", "Number of rRNAs": "5", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium tusciae", "strain": "strain=DSM 44338", "accession": "GCA_002086795.1", "taxid": 75922, "species_taxid": 75922, "relation_to_type": "type", "validated": true, "ani": 85.71, "matched_fragments": 1572, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium gadium", "strain": "strain=JCM 12688", "accession": "GCA_010728925.1", "taxid": 1794, "species_taxid": 1794, "relation_to_type": "type", "validated": true, "ani": 85.4695, "matched_fragments": 1535, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=CIP105393", "accession": "GCA_002086395.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 83.8194, "matched_fragments": 1368, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=JCM 6375", "accession": "GCA_010726085.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 83.7852, "matched_fragments": 1391, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, "relation_to_type": "type", "validated": true, "ani": 81.1351, "matched_fragments": 1133, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lehmannii", "strain": "strain=CECT 8763", "accession": "GCA_002245535.1", "taxid": 2048550, "species_taxid": 2048550, "relation_to_type": "type", "validated": true, "ani": 80.4975, "matched_fragments": 1053, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.4306, "matched_fragments": 1028, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_001583415.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.4187, "matched_fragments": 1034, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium komanii", "strain": "strain=GPK 1020", "accession": "GCA_001050035.1", "taxid": 1566885, "species_taxid": 1566885, "relation_to_type": "type", "validated": true, "ani": 80.4051, "matched_fragments": 1049, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_009192875.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.3764, "matched_fragments": 1030, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium monacense", "strain": "strain=JCM 15658", "accession": "GCA_010731575.1", "taxid": 85693, "species_taxid": 85693, "relation_to_type": "type", "validated": true, "ani": 80.1238, "matched_fragments": 932, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium monacense", "strain": "strain=DSM 44395", "accession": "GCA_002086655.1", "taxid": 85693, "species_taxid": 85693, "relation_to_type": "type", "validated": true, "ani": 80.0828, "matched_fragments": 925, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium monacense", "strain": "strain=DSM 44395", "accession": "GCA_009931355.1", "taxid": 85693, "species_taxid": 85693, "relation_to_type": "type", "validated": true, "ani": 80.064, "matched_fragments": 945, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium psychrotolerans", "strain": "strain=JCM 13323", "accession": "GCA_010729305.1", "taxid": 216929, "species_taxid": 216929, "relation_to_type": "type", "validated": true, "ani": 79.853, "matched_fragments": 907, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium litorale", "strain": "strain=CGMCC 4.5724", "accession": "GCA_004366555.1", "taxid": 758802, "species_taxid": 758802, "relation_to_type": "type", "validated": true, "ani": 79.8105, "matched_fragments": 885, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium branderi", "strain": "strain=JCM 12687", "accession": "GCA_010728725.1", "taxid": 43348, "species_taxid": 43348, "relation_to_type": "type", "validated": true, "ani": 78.6501, "matched_fragments": 674, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium branderi", "strain": "strain=DSM 44624", "accession": "GCA_002086575.1", "taxid": 43348, "species_taxid": 43348, "relation_to_type": 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