# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_48	LOCUS_00470	sequence01:44530..45618(+)	frameshift		45600	WP_002485232.1	nitrite reductase large subunit NirB	98.6	44.6	75.1
MGA_49	LOCUS_00480	sequence01:45666..46940(+)	frameshift		45603	WP_002485232.1	nitrite reductase large subunit NirB	99.5	52.7	78.7
MGA_52	LOCUS_00510	sequence01:48695..51079(+)	partial			WP_000943819.1	YSIRK domain-containing triacylglycerol lipase Lip2/Geh	54.9	66.3	54.6
MGA_62	LOCUS_00610	sequence01:62095..62463(-)	partial			WP_001797427.1	Hsp20/alpha crystallin family protein	73.0	62.0	40.4
MGA_67	LOCUS_00660	sequence01:67451..68026(+)	partial			WP_001148136.1	SH3 domain-containing protein	81.2	32.8	37.0
MGA_174	LOCUS_01720	sequence03:19118..19702(-)	partial			WP_002455937.1	hypothetical protein	67.5	65.2	29.8
MGA_175	LOCUS_01730	sequence03:19747..20331(-)	partial			WP_001044560.1	immunodominant staphylococcal antigen IsaB	70.1	78.9	31.7
MGA_176	LOCUS_01740	sequence03:20456..21046(-)	partial			WP_001044560.1	immunodominant staphylococcal antigen IsaB	68.9	74.9	28.5
MGA_273	LOCUS_02700	sequence04:45602..45862(-)	internal_stop_codon	46001..46003(-)		WP_001242442.1	BCCT family transporter	96.5	15.1	42.2
MGA_275	LOCUS_02720	sequence04:46001..47113(-)	internal_stop_codon	46001..46003(-)		WP_001242442.1	BCCT family transporter	99.5	70.7	50.5
MGA_283	LOCUS_02800	sequence04:54123..54929(-)	partial			WP_010870536.1	ATP-binding cassette domain-containing protein	72.4	76.0	29.6
MGA_291	LOCUS_02880	sequence04:61260..61589(-)	frameshift		61651	WP_001121273.1	LysE family transporter	78.9	44.3	46.5
MGA_302	LOCUS_02990	sequence04:70434..70739(-)	frameshift		70801	WP_001831043.1	HAMP domain-containing histidine kinase	100.0	22.1	72.3
MGA_303	LOCUS_03000	sequence04:70772..71788(-)	frameshift		70801	WP_001831043.1	HAMP domain-containing histidine kinase	98.8	73.2	58.7
MGA_337	LOCUS_03320	sequence05:34320..34964(+)	partial			WP_000070831.1	DUF4887 domain-containing protein	21.5	23.9	56.0
MGA_376	LOCUS_03710	sequence05:64463..64993(+)	partial			WP_011948772.1	GNAT family protein	60.2	58.5	47.2
MGA_384	LOCUS_03790	sequence05:68915..69349(-)	partial			WP_010989411.1	DUF1433 domain-containing protein	40.3	44.9	43.1
MGA_387	LOCUS_03820	sequence05:70403..70837(-)	partial			WP_010989411.1	DUF1433 domain-containing protein	40.3	44.9	44.8
MGA_405	LOCUS_03980	sequence06:10560..10718(-)	partial			WP_001838183.1	zinc-finger domain-containing protein	100.0	71.2	75.0
MGA_446	LOCUS_04390	sequence06:53555..55129(-)	partial			WP_000069289.1	elastin-binding protein EbpS	16.0	17.5	52.9
MGA_485	LOCUS_04770	sequence07:28424..28552(-)	frameshift,internal_stop_codon	28700..28702(-),28571..28573(-)	28552,28636,28780	WP_126475239.1	IS1182 family transposase	88.1	6.8	83.8
MGA_539	LOCUS_05290	sequence08:12965..13723(+)	internal_stop_codon	13721..13723(+)		WP_002263000.1	BtrH N-terminal domain-containing protein	96.0	73.3	55.8
MGA_586	LOCUS_05760	sequence08:57074..57424(+)	frameshift,internal_stop_codon	57057..57059(+),57048..57050(+),57012..57014(+)	57068	WP_001801792.1	ATP synthase subunit I	98.3	76.0	54.4
MGA_613	LOCUS_06020	sequence09:18056..18541(-)	internal_stop_codon	18560..18562(-)		WP_001830014.1	ammonium transporter	98.8	38.2	53.5
MGA_614	LOCUS_06030	sequence09:18560..19300(-)	internal_stop_codon	18560..18562(-)		WP_001830014.1	ammonium transporter	100.0	59.1	77.2
MGA_710	LOCUS_06970	sequence11:8260..9558(+)	frameshift		8243	WP_012972453.1	DEAD/DEAH box helicase	93.8	84.9	35.4
MGA_720	LOCUS_07070	sequence11:15197..15844(+)	partial			WP_001004505.1	NUMOD4 domain-containing protein	54.4	71.0	44.7
MGA_742	LOCUS_07290	sequence11:22070..22420(+)	partial			WP_010965201.1	HNH endonuclease signature motif containing protein	58.6	65.0	52.9
MGA_759	LOCUS_07460	sequence11:36429..38012(+)	partial			WP_010989348.1	phage tail protein	42.9	56.6	35.8
MGA_762	LOCUS_07490	sequence11:40501..41952(+)	partial			WP_000259629.1	BppU family phage baseplate upper protein	55.9	37.1	31.1
MGA_768	LOCUS_07550	sequence11:43725..45113(+)	partial			WP_001041666.1	LysM peptidoglycan-binding domain-containing protein	29.9	38.2	49.3
MGA_802	LOCUS_07890	sequence11:81220..81720(+)	frameshift		81693	WP_000233526.1	uroporphyrinogen decarboxylase	95.8	46.1	91.2
MGA_803	LOCUS_07900	sequence11:81720..82253(+)	frameshift		81696	WP_164924954.1	uroporphyrinogen decarboxylase	100.0	50.1	75.1
MGA_807	LOCUS_07940	sequence11:86604..86936(+)	partial			WP_003242768.1	carboxymuconolactone decarboxylase family protein	97.3	72.8	60.7
MGA_869	LOCUS_08560	sequence11:152371..152712(-)	frameshift		152404,152741	WP_099835063.1	IS3 family transposase	69.0	20.5	65.4
MGA_870	LOCUS_08570	sequence11:152697..153011(-)	frameshift		152404,152741	WP_099835063.1	IS3 family transposase	96.2	26.3	80.0
MGA_1012	LOCUS_09970	sequence12:32726..33358(+)	frameshift		32714	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	100.0	45.5	65.7
MGA_1014	LOCUS_09990	sequence12:34685..34873(+)	frameshift,internal_stop_codon	34674..34676(+)	34577	WP_010971062.1	VOC family protein	96.8	49.2	50.0
MGA_1034	LOCUS_10190	sequence13:9272..10423(-)	frameshift		9280	WP_002382276.1	hydroxymethylglutaryl-CoA reductase, degradative	99.5	47.9	52.1
MGA_1145	LOCUS_11280	sequence15:34383..35270(+)	partial			WP_002439035.1	D-alanyl-lipoteichoic acid biosynthesis protein DltB	99.3	72.5	78.2
MGA_1168	LOCUS_11510	sequence16:19346..19732(-)	partial			WP_011475614.1	LexA family transcriptional regulator	97.7	46.9	37.8
MGA_1173	LOCUS_11560	sequence16:20942..23332(+)	partial			WP_010714140.1	DNA primase family protein	61.8	62.6	51.5
MGA_1190	LOCUS_11730	sequence16:33175..33339(-)	frameshift,internal_stop_codon	33388..33390(-)	33475	WP_126564639.1	site-specific integrase	96.3	12.9	90.4
MGA_1193	LOCUS_11760	sequence16:34563..34739(+)	frameshift,internal_stop_codon	34771..34773(+)	34733,34423	WP_001293076.1	terminase small subunit	98.3	30.2	63.2
MGA_1194	LOCUS_11770	sequence16:34983..35339(-)	partial			WP_000728330.1	DUF1433 domain-containing protein	84.7	74.8	35.0
MGA_1199	LOCUS_11800	sequence17:1413..1892(-)	frameshift		1981	WP_000020814.1	T7SS effector LXG polymorphic toxin	98.7	27.6	40.8
MGA_1200	LOCUS_11810	sequence17:1967..2893(-)	frameshift		1993	WP_000020814.1	T7SS effector LXG polymorphic toxin	98.1	65.1	49.0
MGA_1203	LOCUS_11840	sequence17:3882..4751(+)	partial			WP_011837665.1	type VII secretion protein EssC	99.3	19.4	26.6
MGA_1206	LOCUS_11870	sequence17:5503..7110(+)	partial			WP_002495357.1	hypothetical protein	9.7	44.4	51.9
MGA_1220	LOCUS_12010	sequence17:14928..15635(+)	partial			WP_002485463.1	poly-gamma-glutamate hydrolase family protein	88.5	46.7	64.4
MGA_1225	LOCUS_12060	sequence17:18743..19969(+)	partial			WP_124797038.1	putative glycoside hydrolase	86.5	73.4	34.9
MGA_1226	LOCUS_12070	sequence17:20198..20377(+)	partial			WP_000702778.1	lipoteichoic acid-specific glycosylation protein CsbB	84.7	15.3	60.0
MGA_1233	LOCUS_12140	sequence17:27035..27394(-)	internal_stop_codon	27035..27037(-)		WP_000723836.1	polysaccharide intercellular adhesin biosynthesis/export protein IcaC	99.2	33.7	55.9
MGA_1252	LOCUS_12310	sequence18:7713..7949(-)	internal_stop_codon	8082..8084(-)		WP_003971922.1	NAD(P)/FAD-dependent oxidoreductase	92.3	19.3	50.0
MGA_1253	LOCUS_12320	sequence18:8082..8873(-)	internal_stop_codon	8082..8084(-)		WP_191310501.1	NAD(P)/FAD-dependent oxidoreductase	95.4	65.9	54.2
MGA_1286	LOCUS_12650	sequence19:14770..15192(+)	partial			WP_010968536.1	nuclear transport factor 2 family protein	31.4	15.3	56.8
MGA_1304	LOCUS_12820	sequence20:558..1052(+)	partial			WP_011105579.1	arsenic resistance protein	91.5	46.9	36.0
MGA_1318	LOCUS_12960	sequence20:8295..8831(-)	partial			WP_001041666.1	LysM peptidoglycan-binding domain-containing protein	78.7	37.6	60.7
MGA_1320	LOCUS_12980	sequence20:9966..10592(+)	partial			WP_000747403.1	LPXTG cell wall anchor domain-containing protein	39.9	35.3	51.8
MGA_1322	LOCUS_13000	sequence20:11641..12168(+)	partial			WP_002485100.1	Ltp family lipoprotein	60.0	47.5	56.2
MGA_1325	LOCUS_13030	sequence20:13850..14107(-)	frameshift,internal_stop_codon	13723..13725(-),13849..13851(-)	14115	WP_001122123.1	class I SAM-dependent methyltransferase	83.5	27.5	33.8
MGA_1342	LOCUS_13200	sequence20:22916..23233(+)	partial			WP_010933110.1	DUF3644 domain-containing protein	54.3	17.5	45.6
MGA_1343	LOCUS_13210	sequence20:23273..23884(+)	internal_stop_codon	23231..23233(+)		WP_011263485.1	DUF3644 domain-containing protein	79.3	54.6	27.6
MGA_1360	LOCUS_13380	sequence21:10113..11546(-)	partial			WP_000678077.1	YhgE/Pip family protein	50.7	23.7	33.5
MGA_1362	LOCUS_13400	sequence21:12114..13427(+)	internal_stop_codon	13425..13427(+)		WP_002485492.1	hypothetical protein	46.5	36.3	39.5
MGA_1363	LOCUS_13410	sequence21:13500..17312(+)	internal_stop_codon	17460..17462(+),17310..17312(+),13425..13427(+),17430..17432(+)		WP_002485492.1	hypothetical protein	28.7	71.8	35.5
MGA_1372	LOCUS_13500	sequence21:26337..26744(-)	frameshift		26812	WP_064240088.1	dihydrofolate reductase family protein	100.0	69.6	39.3
MGA_1421	LOCUS_13970	sequence22:46664..47824(+)	partial			WP_000145499.1	DUF4064 domain-containing protein	65.5	77.3	50.2
MGA_1425	LOCUS_14010	sequence22:51155..51742(+)	frameshift		51721	WP_011082650.1	inositol monophosphatase family protein	96.9	69.2	72.0
MGA_1463	LOCUS_14390	sequence22:92598..93068(+)	frameshift		93062	WP_000659319.1	XTP/dITP diphosphatase	99.4	79.5	78.1
MGA_1465	LOCUS_14410	sequence22:94121..94432(-)	partial			WP_000857191.1	site-specific integrase	98.1	30.4	41.5
MGA_1473	LOCUS_14490	sequence22:98006..98311(+)	internal_stop_codon	98309..98311(+)		WP_001838172.1	terminase small subunit	95.0	66.4	58.8
MGA_1480	LOCUS_14560	sequence22:101127..101600(+)	partial			WP_002485104.1	amidase	50.3	73.1	43.9
MGA_1498	LOCUS_14740	sequence22:117484..118377(+)	partial			WP_002470268.1	FtsQ-type POTRA domain-containing protein	93.3	59.4	57.4
MGA_1594	LOCUS_15690	sequence23:3526..4161(-)	internal_stop_codon	4201..4203(-)		WP_002440602.1	RNA polymerase sigma factor SigB	100.0	82.4	94.3
MGA_1644	LOCUS_16180	sequence24:16225..17532(-)	partial			WP_010990014.1	autolysin Ami	64.1	29.4	41.6
MGA_1654	LOCUS_16280	sequence24:21238..21624(-)	partial			WP_000849163.1	YxeA family protein	68.8	68.9	40.9
MGA_1724	LOCUS_16940	sequence27:16605..>17326(-)	partial			WP_083498292.1	IS1182 family transposase	98.3	50.4	51.5
MGA_1733	LOCUS_17020	sequence28:11953..12123(+)	partial			WP_002456747.1	DUF1672 domain-containing protein	87.5	17.4	54.7
MGA_1734	LOCUS_17030	sequence28:12185..12475(+)	frameshift		12463	WP_002456747.1	DUF1672 domain-containing protein	95.8	30.3	69.6
MGA_1739	LOCUS_17070	sequence29:2341..3291(-)	partial			WP_000245682.1	low temperature requirement protein A	84.5	71.1	26.9
MGA_1771	LOCUS_17360	sequence33:20886..21227(-)	frameshift		21244	WP_000197262.1	5'-3'-deoxyribonucleotidase	93.8	58.9	84.9
MGA_1772	LOCUS_17370	sequence33:21233..21433(-)	frameshift		21244	WP_000197262.1	5'-3'-deoxyribonucleotidase	100.0	36.7	63.6
MGA_1800	LOCUS_17650	sequence33:51578..52318(-)	partial			WP_001830333.1	hypothetical protein	59.3	84.6	32.9
MGA_1821	LOCUS_17860	sequence33:69151..69363(-)	partial			WP_001832142.1	hypothetical protein	95.7	47.9	41.8
MGA_1879	LOCUS_18440	sequence33:127985..128482(+)	frameshift		127832	WP_002485113.1	hypothetical protein	98.2	50.5	30.2
MGA_1944	LOCUS_19090	sequence33:184113..184523(+)	internal_stop_codon	184521..184523(+)		WP_002438524.1	MFS transporter	97.8	33.5	45.9
MGA_1945	LOCUS_19100	sequence33:184635..185288(+)	internal_stop_codon	184521..184523(+)		WP_010905157.1	MFS transporter	84.8	46.8	48.4
MGA_1988	LOCUS_19450	sequence40:29627..29803(-)	frameshift		29913	WP_002469356.1	energy-coupling factor transporter ATPase	100.0	21.6	51.7
MGA_1989	LOCUS_19460	sequence40:29893..30435(-)	frameshift		29913	WP_000389658.1	energy-coupling factor transporter ATPase	96.7	64.7	66.1
MGA_2143	LOCUS_21000	sequence40:174227..175000(-)	partial			WP_000827010.1	hypothetical protein	43.6	54.9	49.1
MGA_2176	LOCUS_21310	sequence41:17078..18361(-)	internal_stop_codon	18365..18367(-)		WP_000627647.1	carbon starvation CstA family protein	93.7	83.1	64.0
MGA_2177	LOCUS_21320	sequence41:18365..18535(-)	internal_stop_codon	18365..18367(-)		WP_000627647.1	carbon starvation CstA family protein	100.0	11.7	58.9
MGA_2183	LOCUS_21380	sequence41:24293..24430(-)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
MGA_2221	LOCUS_21760	sequence41:70878..71639(+)	partial			WP_001124128.1	YafY family protein	92.9	73.4	59.6
MGA_2223	LOCUS_21780	sequence41:71930..72148(-)	frameshift		71956	WP_002437653.1	DUF1433 domain-containing protein	90.3	50.0	42.6
MGA_2224	LOCUS_21790	sequence41:72138..72467(-)	frameshift		71956	WP_002437653.1	DUF1433 domain-containing protein	69.7	58.1	40.5
MGA_2225	LOCUS_21800	sequence41:72568..72900(+)	internal_stop_codon	72898..72900(+)		WP_001288653.1	hypothetical protein	83.6	24.5	33.7
MGA_2228	LOCUS_21830	sequence41:74779..74913(+)	frameshift		74516,74615	WP_000977803.1	tandem-type lipoprotein	95.5	16.4	76.2
MGA_2231	LOCUS_21860	sequence41:76993..77316(+)	partial			WP_001044255.1	membrane protein	97.2	23.8	60.0
MGA_2244	LOCUS_21990	sequence41:89669..90394(+)	partial			WP_011068550.1	HNH endonuclease	46.9	39.6	35.6
MGA_2250	LOCUS_22050	sequence41:98742..99083(+)	partial			WP_010971320.1	helix-turn-helix domain-containing protein	77.9	69.0	39.3
MGA_2264	LOCUS_22190	sequence41:111504..116456(+)	partial			WP_013399748.1	Rib/alpha-like domain-containing protein	40.3	21.9	33.5
MGA_2271	LOCUS_22260	sequence41:127854..128498(+)	partial			WP_001792547.1	alpha/beta hydrolase	99.5	72.4	78.9
MGA_2272	LOCUS_22270	sequence41:128603..129061(-)	partial			WP_001830674.1	zinc ribbon domain-containing protein	52.0	17.6	73.8
MGA_2274	LOCUS_22290	sequence41:130416..130649(-)	frameshift		130630	WP_000007825.1	YdcF family protein	96.1	21.5	37.8
MGA_2275	LOCUS_22300	sequence41:130601..131428(-)	frameshift		130630	WP_000007825.1	YdcF family protein	80.0	66.0	33.3
MGA_2285	LOCUS_22400	sequence41:141152..141814(+)	frameshift		141811	WP_001062984.1	GTP-binding protein	100.0	55.0	82.3
MGA_2286	LOCUS_22410	sequence41:141819..142205(+)	frameshift,internal_stop_codon	142203..142205(+)	141811	WP_001062984.1	GTP-binding protein	100.0	32.0	75.0
MGA_2287	LOCUS_22420	sequence41:142926..146888(+)	frameshift,internal_stop_codon	146874..146876(+),146871..146873(+),146862..146864(+)	146882,146885,142921,146861,145006,146867,142939,146876,146879	WP_000044547.1	serine-rich repeat glycoprotein adhesin SasA	62.3	33.6	53.2
MGA_2368	LOCUS_23210	sequence42:74451..74912(-)	internal_stop_codon	74931..74933(-)		WP_001831857.1	CapA family protein	98.7	38.9	55.6
MGA_2369	LOCUS_23220	sequence42:74931..75593(-)	internal_stop_codon	74931..74933(-)		WP_001831857.1	CapA family protein	99.1	57.5	52.0
MGA_2409	LOCUS_23620	sequence42:122241..122960(-)	frameshift		122965	WP_002456741.1	alpha-keto acid decarboxylase family protein	99.6	43.4	64.0
MGA_2410	LOCUS_23630	sequence42:122957..123883(-)	frameshift		122971	WP_002456741.1	alpha-keto acid decarboxylase family protein	100.0	56.1	76.3
MGA_2422	LOCUS_23750	sequence42:135356..141331(-)	partial			WP_003147473.1	Ig-like domain-containing protein	52.7	41.9	34.0
MGA_2447	LOCUS_23990	sequence43:15142..15615(-)	partial			WP_010905454.1	MarR family transcriptional regulator	74.5	78.3	43.6
MGA_2571	LOCUS_25220	sequence44:31304..31480(+)	partial			WP_000048060.1	30S ribosomal protein S21	74.1	74.1	95.3
MGA_2614	LOCUS_25650	sequence44:69356..69577(-)	partial			WP_001244298.1	SA1362 family protein	74.0	75.0	64.8
MGA_2637	LOCUS_25880	sequence44:91985..92560(+)	frameshift		92477,91982	WP_000256319.1	LacI family DNA-binding transcriptional regulator	86.4	49.3	46.7
MGA_2638	LOCUS_25890	sequence44:92463..92873(+)	frameshift		92485	WP_000256319.1	LacI family DNA-binding transcriptional regulator	80.9	33.6	44.7
MGA_2652	LOCUS_26020	sequence45:11677..12090(-)	frameshift		12110	WP_001831568.1	GTP pyrophosphokinase family protein	97.1	57.1	75.9
MGA_2653	LOCUS_26030	sequence45:12105..12371(-)	frameshift		12110	WP_001831568.1	GTP pyrophosphokinase family protein	98.9	37.3	64.4
MGA_2662	LOCUS_26120	sequence45:23178..23450(+)	frameshift		23447	WP_099835063.1	IS3 family transposase	100.0	23.7	87.8
MGA_2663	LOCUS_26130	sequence45:23536..24276(+)	frameshift		24243,23444	WP_099835063.1	IS3 family transposase	95.9	62.1	86.0
MGA_2668	LOCUS_26180	sequence45:29663..29980(-)	frameshift		29954	WP_003234172.1	ring-cleaving dioxygenase	84.8	28.5	51.7
MGA_2669	LOCUS_26190	sequence45:29913..30566(-)	frameshift		29960	WP_003234172.1	ring-cleaving dioxygenase	81.6	59.3	41.6
MGA_2678	LOCUS_26280	sequence45:40457..40600(+)	internal_stop_codon	40433..40435(+)		WP_011102204.1	6-phospho-beta-glucosidase	95.7	9.2	75.6