{
    "type": "genome",
    "identifier": "GCF_002632465.1",
    "organism": "Xenorhabdus budapestensis",
    "title": "Xenorhabdus budapestensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Goethe University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002632465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05375095",
        "wgs_master": "NIBS00000000.1",
        "refseq_category": "na",
        "taxid": "290110",
        "species_taxid": "290110",
        "organism_name": "Xenorhabdus budapestensis",
        "infraspecific_name": "strain=DSM 16342",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/10/23",
        "asm_name": "ASM263246v1",
        "asm_submitter": "Goethe University",
        "gbrs_paired_asm": "GCA_002632465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/632/465/GCF_002632465.1_ASM263246v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4313848",
        "genome_size_ungapped": "4311148",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "173",
        "contig_count": "173",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002632465.1-RS_2024_04_25",
        "annotation_date": "2024-04-25",
        "total_gene_count": "3863",
        "protein_coding_gene_count": "3572",
        "non_coding_gene_count": "94",
        "pubmed_id": "28993611"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-10-23",
    "dateModified": "2017-10-23",
    "datePublished": "2017-10-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Xenorhabdus budapestensis"
        ],
        "sample_taxid": [
            "290110"
        ],
        "sample_host_organism": [
            "Steinernema bicornutum"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Serbia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.230 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4313848",
        "Number of Sequences": "173",
        "Longest Sequences (bp)": "573214",
        "N50 (bp)": "154276",
        "Gap Ratio (%)": "0.062589",
        "GCcontent (%)": "43.1",
        "Number of CDSs": "3648",
        "Average Protein Length": "325.1",
        "Coding Ratio (%)": "82.5",
        "Number of rRNAs": "12",
        "Number of tRNAs": "69",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1365,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_003386665.1",
                "taxid": 351673,
                "species_taxid": 351673,
                "relation_to_type": "type",
                "validated": true,
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                "status": "below_threshold"
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            {
                "organism_name": "Xenorhabdus indica",
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                "species_taxid": 333964,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Xenorhabdus stockiae",
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                "species_taxid": 351614,
                "relation_to_type": "type",
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                "ani": 83.9201,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xenorhabdus innexi",
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                "taxid": 290109,
                "species_taxid": 290109,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 937,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xenorhabdus bovienii",
                "strain": "strain=T228",
                "accession": "GCA_024721015.1",
                "taxid": 40576,
                "species_taxid": 40576,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xenorhabdus hominickii",
                "strain": "strain=DSM 17903",
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                "species_taxid": 351679,
                "relation_to_type": "type",
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                "ani": 81.9345,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xenorhabdus lircayensis",
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            },
            {
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                "accession": "GCA_025384845.1",
                "taxid": 574560,
                "species_taxid": 574560,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photorhabdus hindustanensis",
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                "accession": "GCA_002968995.1",
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            {
                "organism_name": "Photorhabdus kayaii",
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        ],
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                "accession": "GCF_002632465.1",
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}