{ "type": "genome", "identifier": "GCF_002632615.1", "organism": "Xenorhabdus miraniensis", "title": "Xenorhabdus miraniensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Goethe University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002632615.1", "bioproject": "PRJNA224116", "biosample": "SAMN05375099", "wgs_master": "NITZ00000000.1", "refseq_category": "reference genome", "taxid": "351674", "species_taxid": "351674", "organism_name": "Xenorhabdus miraniensis", "infraspecific_name": "strain=DSM 17902", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/23", "asm_name": "ASM263261v1", "asm_submitter": "Goethe University", "gbrs_paired_asm": "GCA_002632615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/632/615/GCF_002632615.1_ASM263261v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4995255", "genome_size_ungapped": "4992355", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "138", "contig_count": "138", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002632615.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4448", "protein_coding_gene_count": "4164", "non_coding_gene_count": "111", "pubmed_id": "28993611" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-23", "dateModified": "2017-10-23", "datePublished": "2017-10-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Xenorhabdus miraniensis" ], "sample_taxid": [ "351674" ], "sample_host_organism": [ "Steinernema" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Queensland" ], "sample_host_location_id": [], "data_size": "1.421 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 33.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4995255", "Number of Sequences": "138", "Longest Sequences (bp)": "419248", "N50 (bp)": "170658", "Gap Ratio (%)": "0.058055", "GCcontent (%)": "43.7", "Number of CDSs": "4163", "Average Protein Length": "331.5", "Coding Ratio (%)": "82.9", "Number of rRNAs": "19", "Number of tRNAs": "86", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Xenorhabdus miraniensis", "strain": "strain=DSM 17902", "accession": "GCA_002632615.1", "taxid": 351674, "species_taxid": 351674, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1550, 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"below_threshold" }, { "organism_name": "Xenorhabdus vietnamensis", "strain": "strain=DSM 22392", "accession": "GCA_002127535.1", "taxid": 351656, "species_taxid": 351656, "relation_to_type": "type", "validated": true, "ani": 84.4674, "matched_fragments": 1077, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus ehlersii", "strain": "strain=DSM 16337", "accession": "GCA_003610465.1", "taxid": 290111, "species_taxid": 290111, "relation_to_type": "type", "validated": true, "ani": 84.4603, "matched_fragments": 1008, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus eapokensis", "strain": "strain=DL20", "accession": "GCA_001908105.1", "taxid": 1873482, "species_taxid": 1873482, "relation_to_type": "type", "validated": true, "ani": 84.1469, "matched_fragments": 938, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus 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