{ "type": "genome", "identifier": "GCF_002632825.1", "organism": "Xenorhabdus stockiae", "title": "Xenorhabdus stockiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Goethe University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002632825.1", "bioproject": "PRJNA224116", "biosample": "SAMN05375103", "wgs_master": "NJAJ00000000.1", "refseq_category": "reference genome", "taxid": "351614", "species_taxid": "351614", "organism_name": "Xenorhabdus stockiae", "infraspecific_name": "strain=DSM 17904", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/23", "asm_name": "ASM263282v1", "asm_submitter": "Goethe University", "gbrs_paired_asm": "GCA_002632825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/632/825/GCF_002632825.1_ASM263282v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4668612", "genome_size_ungapped": "4667712", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "180", "contig_count": "180", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002632825.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "4179", "protein_coding_gene_count": "3966", "non_coding_gene_count": "96", "pubmed_id": "28993611" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-23", "dateModified": "2017-10-23", "datePublished": "2017-10-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Xenorhabdus stockiae" ], "sample_taxid": [ "351614" ], "sample_host_organism": [ "Steinernema siamkayai" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "1.330 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4668612", "Number of Sequences": "180", "Longest Sequences (bp)": "209653", "N50 (bp)": "114885", "Gap Ratio (%)": "0.019278", "GCcontent (%)": "43.5", "Number of CDSs": "3977", "Average Protein Length": "324.7", "Coding Ratio (%)": "83.0", "Number of rRNAs": "9", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Xenorhabdus stockiae", "strain": "strain=DSM 17904", "accession": "GCA_002632825.1", "taxid": 351614, "species_taxid": 351614, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1468, "total_fragments": 1476, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Xenorhabdus innexi", "strain": "strain=DSM 16336", "accession": "GCA_002632485.1", "taxid": 290109, "species_taxid": 290109, "relation_to_type": "type", "validated": true, "ani": 87.789, "matched_fragments": 1086, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus budapestensis", "strain": "strain=DSM 16342", "accession": "GCA_002632465.1", "taxid": 290110, "species_taxid": 290110, "relation_to_type": "type", "validated": true, "ani": 83.7841, "matched_fragments": 945, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus cabanillasii", "strain": "strain=DSM 17905", "accession": "GCA_003386665.1", "taxid": 351673, "species_taxid": 351673, "relation_to_type": "type", "validated": true, "ani": 83.5888, "matched_fragments": 961, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus indica", "strain": "strain=DSM 17382", "accession": "GCA_014467235.1", "taxid": 333964, "species_taxid": 333964, "relation_to_type": "type", "validated": true, "ani": 83.5765, "matched_fragments": 1003, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus bovienii", "strain": "strain=T228", "accession": "GCA_024721015.1", "taxid": 40576, "species_taxid": 40576, "relation_to_type": "type", "validated": true, "ani": 81.5227, "matched_fragments": 726, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus vietnamensis", "strain": "strain=DSM 22392", "accession": "GCA_002127535.1", "taxid": 351656, "species_taxid": 351656, "relation_to_type": "type", "validated": true, "ani": 81.225, "matched_fragments": 740, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus lircayensis", "strain": "strain=VLS", "accession": "GCA_016306625.1", "taxid": 2763499, "species_taxid": 2763499, "relation_to_type": "type", "validated": true, "ani": 81.1508, "matched_fragments": 730, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photorhabdus temperata", "strain": "strain=DSM 14550", "accession": "GCA_025384845.1", "taxid": 574560, "species_taxid": 574560, "relation_to_type": "type", "validated": true, "ani": 78.9622, "matched_fragments": 369, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 78.6175, "matched_fragments": 111, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": 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