{
    "type": "genome",
    "identifier": "GCF_002701265.1",
    "organism": "Malaciobacter molluscorum LMG 25693",
    "title": "Malaciobacter molluscorum LMG 25693",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Universitat Rovira i Virgili",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002701265.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07701800",
        "wgs_master": "NXFY00000000.1",
        "refseq_category": "na",
        "taxid": "870501",
        "species_taxid": "1032072",
        "organism_name": "Malaciobacter molluscorum LMG 25693",
        "infraspecific_name": "strain=F98-3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/10/24",
        "asm_name": "ASM270126v1",
        "asm_submitter": "Universitat Rovira i Virgili",
        "gbrs_paired_asm": "GCA_002701265.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/701/265/GCF_002701265.1_ASM270126v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2756560",
        "genome_size_ungapped": "2756560",
        "gc_percent": "26.000000",
        "replicon_count": "0",
        "scaffold_count": "117",
        "contig_count": "117",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002701265.1-RS_2024_12_25",
        "annotation_date": "2024-12-25",
        "total_gene_count": "2820",
        "protein_coding_gene_count": "2720",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-10-24",
    "dateModified": "2017-10-24",
    "datePublished": "2017-10-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Malaciobacter molluscorum LMG 25693"
        ],
        "sample_taxid": [
            "870501"
        ],
        "sample_host_organism": [
            "Mussel"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain: Ebro Delta"
        ],
        "sample_host_location_id": [],
        "data_size": "0.740 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2756560",
        "Number of Sequences": "117",
        "Longest Sequences (bp)": "303526",
        "N50 (bp)": "121089",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "26.1",
        "Number of CDSs": "2677",
        "Average Protein Length": "312.5",
        "Coding Ratio (%)": "91.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Malaciobacter molluscorum",
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                "relation_to_type": "type",
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            {
                "organism_name": "Malaciobacter molluscorum",
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                "species_taxid": 1032072,
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                "status": "conclusive"
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                "species_taxid": 197482,
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                "status": "below_threshold"
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            {
                "organism_name": "Malaciobacter marinus",
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                "species_taxid": 505249,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malaciobacter canalis",
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                "taxid": 1912871,
                "species_taxid": 1912871,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malaciobacter canalis",
                "strain": "strain=F138-33",
                "accession": "GCA_002723485.1",
                "taxid": 1912871,
                "species_taxid": 1912871,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8832,
                "matched_fragments": 589,
                "total_fragments": 885,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malaciobacter mytili",
                "strain": "strain=CECT 7386",
                "accession": "GCA_004116555.1",
                "taxid": 603050,
                "species_taxid": 603050,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malaciobacter mytili",
                "strain": "strain=LMG 24559",
                "accession": "GCA_003346775.1",
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                "status": "below_threshold"
            }
        ],
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                "accession": "GCF_003544935.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter",
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                "num_clustered_genomes": 3,
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                "accession": "GCA_004116725.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_004116495.1",
                "gtdb_species": "s__Malaciobacter sp004116495",
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter",
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            {
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "sporulation": null,
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        "facultative_respiration": null,
        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
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        "vibrio_cell_shape": null,
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    },
    "_genome_taxon": [
        "Malaciobacter",
        "molluscorum",
        "LMG",
        "25693"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}