{ "tc_result": [ { "organism_name": "Loigolactobacillus coryniformis subsp. torquens", "strain": "strain=DSM 20004", "accession": "GCA_002706705.1", "taxid": 115542, "species_taxid": 1610, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1037, "total_fragments": 1045, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Loigolactobacillus coryniformis subsp. torquens", "strain": "strain=KCTC 3535", "accession": "GCA_000184285.2", "taxid": 115542, "species_taxid": 1610, "relation_to_type": "type", "validated": true, "ani": 99.6281, "matched_fragments": 747, "total_fragments": 1045, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Loigolactobacillus coryniformis subsp. torquens", "strain": "strain=DSM 20004", "accession": "GCA_001435425.1", "taxid": 115542, "species_taxid": 1610, "relation_to_type": "type", "validated": true, "ani": 99.6122, "matched_fragments": 756, "total_fragments": 1045, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Loigolactobacillus coryniformis subsp. coryniformis", "strain": "strain=DSM 20001", "accession": "GCA_002706425.1", "taxid": 115541, "species_taxid": 1610, "relation_to_type": "type", "validated": true, "ani": 97.4034, "matched_fragments": 785, "total_fragments": 1045, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Loigolactobacillus coryniformis subsp. coryniformis", "strain": "strain=KCTC 3167", "accession": "GCA_000166795.1", "taxid": 115541, "species_taxid": 1610, "relation_to_type": "type", "validated": true, "ani": 97.3464, "matched_fragments": 790, "total_fragments": 1045, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Loigolactobacillus coryniformis subsp. coryniformis", "strain": "strain=DSM 20001", "accession": "GCA_001433765.1", "taxid": 115541, "species_taxid": 1610, "relation_to_type": "type", "validated": true, "ani": 97.2496, "matched_fragments": 704, "total_fragments": 1045, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Loigolactobacillus zhaoyuanensis", "strain": "strain=187-3", "accession": "GCA_003946385.1", "taxid": 2486017, "species_taxid": 2486017, "relation_to_type": "type", "validated": true, "ani": 81.339, "matched_fragments": 462, "total_fragments": 1045, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrilactobacillus fermenti", "strain": "strain=CC-MHH1034", "accession": "GCA_021030645.1", "taxid": 2586909, "species_taxid": 2586909, "relation_to_type": "type", "validated": true, "ani": 77.0894, "matched_fragments": 53, "total_fragments": 1045, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002706425.1", "gtdb_species": "s__Loigolactobacillus coryniformis", "ani": 97.4169, "matched_fragments": 784, "total_fragments": 1045, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Loigolactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "97.42", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_005405165.1", "gtdb_species": "s__Loigolactobacillus binensis", "ani": 81.6911, "matched_fragments": 462, "total_fragments": 1045, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Loigolactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003946445.1", "gtdb_species": "s__Loigolactobacillus jiayinensis", "ani": 81.4135, "matched_fragments": 527, "total_fragments": 1045, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Loigolactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014131735.1", "gtdb_species": "s__Lactiplantibacillus plantarum", "ani": 81.3773, "matched_fragments": 63, "total_fragments": 1045, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "95.74", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.82", "num_clustered_genomes": 629, "status": "-" }, { "accession": "GCF_003946385.1", "gtdb_species": "s__Loigolactobacillus zhaoyuanensis", "ani": 81.3407, "matched_fragments": 461, "total_fragments": 1045, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Loigolactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003946275.1", "gtdb_species": "s__Loigolactobacillus backii", "ani": 80.4773, "matched_fragments": 142, "total_fragments": 1045, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Loigolactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_003950295.1", "gtdb_species": "s__Loigolactobacillus iwatensis", "ani": 79.5629, "matched_fragments": 140, "total_fragments": 1045, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Loigolactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002953655.1", "gtdb_species": "s__Latilactobacillus sakei_A", "ani": 79.4492, "matched_fragments": 58, "total_fragments": 1045, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Latilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001436505.1", "gtdb_species": "s__Loigolactobacillus rennini", "ani": 78.0558, "matched_fragments": 163, "total_fragments": 1045, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Loigolactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001434575.1", "gtdb_species": "s__Loigolactobacillus bifermentans", "ani": 77.9748, "matched_fragments": 129, "total_fragments": 1045, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Loigolactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }