{
    "type": "genome",
    "identifier": "GCF_002715865.1",
    "organism": "Bifidobacterium asteroides DSM 20089",
    "title": "Bifidobacterium asteroides DSM 20089",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kyungpook National University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002715865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05912982",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1437594",
        "species_taxid": "1684",
        "organism_name": "Bifidobacterium asteroides DSM 20089",
        "infraspecific_name": "strain=DSM 20089",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/10/25",
        "asm_name": "ASM271586v1",
        "asm_submitter": "Kyungpook National University",
        "gbrs_paired_asm": "GCA_002715865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/715/865/GCF_002715865.1_ASM271586v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2190368",
        "genome_size_ungapped": "2190368",
        "gc_percent": "60.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-05",
        "total_gene_count": "1755",
        "protein_coding_gene_count": "1671",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-10-25",
    "dateModified": "2017-10-25",
    "datePublished": "2017-10-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium asteroides DSM 20089"
        ],
        "sample_taxid": [
            "1437594"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy"
        ],
        "sample_host_location_id": [],
        "data_size": "0.614 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2190368",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2190368",
        "N50 (bp)": "2190368",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.0",
        "Number of CDSs": "1739",
        "Average Protein Length": "360.6",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Bifidobacterium asteroides",
                "strain": "strain=DSM 20089",
                "accession": "GCA_002715865.1",
                "taxid": 1684,
                "species_taxid": 1684,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 727,
                "total_fragments": 730,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium asteroides",
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                "accession": "GCA_000771125.1",
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                "species_taxid": 1684,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9165,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium choladohabitans",
                "strain": "strain=B14384H11",
                "accession": "GCA_016102005.1",
                "taxid": 2750947,
                "species_taxid": 2750947,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 587,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium polysaccharolyticum",
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                "accession": "GCA_016101585.1",
                "taxid": 2750967,
                "species_taxid": 2750967,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.5583,
                "matched_fragments": 584,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium apousia",
                "strain": "strain=W8102",
                "accession": "GCA_007559275.1",
                "taxid": 2750996,
                "species_taxid": 2750996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.4589,
                "matched_fragments": 557,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium mizhiense",
                "strain": "strain=S053-2",
                "accession": "GCA_020884755.1",
                "taxid": 2879940,
                "species_taxid": 2879940,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1277,
                "matched_fragments": 570,
                "total_fragments": 730,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconisargentati",
                "strain": "strain=82T25",
                "accession": "GCA_019331675.1",
                "taxid": 2834437,
                "species_taxid": 2834437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5684,
                "matched_fragments": 173,
                "total_fragments": 730,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum",
                "strain": "strain=ATCC 25526",
                "accession": "GCA_022691205.1",
                "taxid": 31954,
                "species_taxid": 1694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6246,
                "matched_fragments": 93,
                "total_fragments": 730,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002715865.1",
                "gtdb_species": "s__Bifidobacterium asteroides",
                "ani": 100.0,
                "matched_fragments": 729,
                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.73",
                "mean_intra_species_af": "0.95",
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                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000967265.1",
                "gtdb_species": "s__Bifidobacterium asteroides_A",
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                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.98",
                "min_intra_species_ani": "96.98",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009683175.1",
                "gtdb_species": "s__Bifidobacterium asteroides_H",
                "ani": 92.1882,
                "matched_fragments": 587,
                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016100725.1",
                "gtdb_species": "s__Bifidobacterium sp016100725",
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                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
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            },
            {
                "accession": "GCF_000499285.1",
                "gtdb_species": "s__Bifidobacterium sp000499285",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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            },
            {
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
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        "asteroides",
        "DSM",
        "20089"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}