{ "type": "genome", "identifier": "GCF_002727065.1", "organism": "Zhengella mangrovi", "title": "Zhengella mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002727065.1", "bioproject": "PRJNA224116", "biosample": "SAMN07809790", "wgs_master": "PDVP00000000.1", "refseq_category": "reference genome", "taxid": "1982044", "species_taxid": "1982044", "organism_name": "Zhengella mangrovi", "infraspecific_name": "strain=X9-2-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/26", "asm_name": "ASM272706v1", "asm_submitter": "Xiamen University", "gbrs_paired_asm": "GCA_002727065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/727/065/GCF_002727065.1_ASM272706v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5066330", "genome_size_ungapped": "5066330", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002727065.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "4875", "protein_coding_gene_count": "4760", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-26", "dateModified": "2017-10-26", "datePublished": "2017-10-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Zhengella mangrovi" ], "sample_taxid": [ "1982044" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.394 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5066330", "Number of Sequences": "76", "Longest Sequences (bp)": "787811", "N50 (bp)": "225635", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.0", "Number of CDSs": "4770", "Average Protein Length": "314.2", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Zhengella mangrovi", "strain": "strain=X9-2-2", "accession": "GCA_002727065.1", "taxid": 1982044, "species_taxid": 1982044, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1655, "total_fragments": 1658, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 79.0025, "matched_fragments": 631, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 78.9215, "matched_fragments": 483, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium composti", "strain": "strain=CC-YTH430", "accession": "GCA_004801285.1", "taxid": 2675109, "species_taxid": 2675109, "relation_to_type": "type", "validated": true, "ani": 78.8966, "matched_fragments": 506, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter 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"GCA_003970795.1", "taxid": 2495581, "species_taxid": 2495581, "relation_to_type": "type", "validated": true, "ani": 78.5711, "matched_fragments": 545, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sediminum", "strain": "strain=KCTC 42205", "accession": "GCA_013240295.1", "taxid": 1849104, "species_taxid": 1849104, "relation_to_type": "type", "validated": true, "ani": 78.5683, "matched_fragments": 464, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium oceanicum", "strain": "strain=B7", "accession": "GCA_001889605.1", "taxid": 1670800, "species_taxid": 1670800, "relation_to_type": "type", "validated": true, "ani": 78.5233, "matched_fragments": 561, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium albiziae", "strain": "strain=DSM 21822", "accession": "GCA_900114255.1", "taxid": 335020, "species_taxid": 335020, "relation_to_type": "type", "validated": true, "ani": 78.5188, "matched_fragments": 478, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelativorans xinjiangense", "strain": "strain=lm93", "accession": "GCA_009812055.1", "taxid": 2681485, "species_taxid": 2681485, "relation_to_type": "type", "validated": true, "ani": 78.4639, "matched_fragments": 449, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelativorans alearense", "strain": "strain=UJN715", "accession": "GCA_010993735.1", "taxid": 2681495, "species_taxid": 2681495, "relation_to_type": "type", "validated": true, "ani": 78.4372, "matched_fragments": 445, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 78.3776, "matched_fragments": 462, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium norvegicum", "strain": "strain=10.2.2", "accession": "GCA_004919685.1", "taxid": 1085774, "species_taxid": 1085774, "relation_to_type": "type", "validated": true, "ani": 78.367, "matched_fragments": 507, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor alexandrii", "strain": "strain=Z3-1", "accession": "GCA_004000215.1", "taxid": 2448161, "species_taxid": 2448161, "relation_to_type": "type", "validated": true, "ani": 78.3547, "matched_fragments": 523, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor arenosus", "strain": "strain=CAU 1489", "accession": "GCA_009742725.1", "taxid": 2682096, "species_taxid": 2682096, "relation_to_type": "type", "validated": true, "ani": 78.2558, "matched_fragments": 512, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sophorae", "strain": "strain=ICMP 19535", "accession": "GCA_002270415.1", "taxid": 1300294, "species_taxid": 1300294, "relation_to_type": "type", "validated": true, "ani": 78.2524, "matched_fragments": 502, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquamicrobium lusatiense", "strain": "strain=DSM 11099", "accession": "GCA_014201615.1", "taxid": 89772, "species_taxid": 89772, "relation_to_type": "type", "validated": true, "ani": 78.1778, "matched_fragments": 373, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 78.1343, "matched_fragments": 539, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 78.0611, "matched_fragments": 403, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor indicus", "strain": "strain=C115", "accession": "GCA_000300515.1", "taxid": 721133, "species_taxid": 721133, "relation_to_type": "type", "validated": true, "ani": 78.0513, "matched_fragments": 303, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 77.5322, "matched_fragments": 255, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCF_002727065.1", "gtdb_species": "s__Zhengella mangrovi", "ani": 100.0, "matched_fragments": 1655, "total_fragments": 1658, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Zhengella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002708825.1", "gtdb_species": "s__Zhengella sp002708825", "ani": 83.0912, "matched_fragments": 989, "total_fragments": 1658, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Zhengella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", 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