{ "type": "genome", "identifier": "GCF_002735225.1", "organism": "Aeromonas salmonicida subsp. pectinolytica 34mel", "title": "Aeromonas salmonicida subsp. pectinolytica 34mel", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Max-Planck-Institute of Biochemistry", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002735225.1", "bioproject": "PRJNA224116", "biosample": "SAMN04208118", "wgs_master": "na", "refseq_category": "na", "taxid": "1324960", "species_taxid": "645", "organism_name": "Aeromonas salmonicida subsp. pectinolytica 34mel", "infraspecific_name": "strain=34mel", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/27", "asm_name": "ASM273522v1", "asm_submitter": "Max-Planck-Institute of Biochemistry", "gbrs_paired_asm": "GCA_002735225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/735/225/GCF_002735225.1_ASM273522v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5012649", "genome_size_ungapped": "5012649", "gc_percent": "58.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002735225.1-RS_2024_03_31", "annotation_date": "2024-03-31", "total_gene_count": "4647", "protein_coding_gene_count": "4354", "non_coding_gene_count": "161", "pubmed_id": "29304740" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-27", "dateModified": "2017-10-27", "datePublished": "2017-10-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeromonas salmonicida subsp. pectinolytica 34mel" ], "sample_taxid": [ "1324960" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.409 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5012649", "Number of Sequences": "1", "Longest Sequences (bp)": "5012649", "N50 (bp)": "5012649", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.3", "Number of CDSs": "4614", "Average Protein Length": "313.5", "Coding Ratio (%)": "86.6", "Number of rRNAs": "31", "Number of tRNAs": "126", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromonas salmonicida subsp. pectinolytica", "strain": "strain=34mel", "accession": "GCA_002735225.1", "taxid": 96473, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1669, "total_fragments": 1670, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas salmonicida subsp. pectinolytica", "strain": "strain=34mel", "accession": "GCA_000447435.2", "taxid": 96473, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 99.8804, "matched_fragments": 1481, "total_fragments": 1670, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas salmonicida", "strain": "strain=NCTC12959", "accession": "GCA_900445115.1", "taxid": 645, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 97.0012, "matched_fragments": 1385, "total_fragments": 1670, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas salmonicida subsp. masoucida", "strain": "strain=NBRC 13784", "accession": "GCA_000647955.1", "taxid": 197700, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 96.9909, "matched_fragments": 1270, "total_fragments": 1670, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas salmonicida subsp. salmonicida", "strain": "strain=ATCC 33658", "accession": "GCA_001643305.1", "taxid": 29491, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 96.9802, "matched_fragments": 1328, "total_fragments": 1670, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas salmonicida subsp. salmonicida", "strain": "strain=CIP 103209", "accession": "GCA_000820065.1", "taxid": 29491, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 96.9629, "matched_fragments": 1334, "total_fragments": 1670, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 77.0163, "matched_fragments": 134, "total_fragments": 1670, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 76.6619, "matched_fragments": 151, "total_fragments": 1670, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella salipaludis", "strain": "strain=SHSM-M6", "accession": "GCA_012911865.1", "taxid": 2723052, "species_taxid": 2723052, "relation_to_type": "type", "validated": true, "ani": 76.4025, "matched_fragments": 132, "total_fragments": 1670, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 76.108, "matched_fragments": 142, "total_fragments": 1670, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 76.0788, "matched_fragments": 131, "total_fragments": 1670, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001643305.1", "gtdb_species": "s__Aeromonas salmonicida", "ani": 97.0045, "matched_fragments": 1326, "total_fragments": 1670, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "96.89", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.86", "num_clustered_genomes": 74, "status": "conclusive" }, { "accession": "GCF_000820005.1", "gtdb_species": "s__Aeromonas piscicola", "ani": 91.681, "matched_fragments": 1293, "total_fragments": 1670, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.5033, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.81", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000819745.1", "gtdb_species": "s__Aeromonas bestiarum", "ani": 91.0726, "matched_fragments": 1332, "total_fragments": 1670, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.5033, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000820025.1", "gtdb_species": "s__Aeromonas popoffii", "ani": 89.9288, "matched_fragments": 1213, "total_fragments": 1670, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.17", "min_intra_species_ani": "98.00", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000014805.1", "gtdb_species": "s__Aeromonas hydrophila", "ani": 88.4482, "matched_fragments": 1297, "total_fragments": 1670, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.01", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 120, "status": "-" }, { "accession": "GCF_900637545.1", "gtdb_species": "s__Aeromonas encheleia", "ani": 87.1843, "matched_fragments": 1202, "total_fragments": 1670, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "97.80", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000819685.1", "gtdb_species": "s__Aeromonas allosaccharophila", "ani": 86.678, "matched_fragments": 1130, "total_fragments": 1670, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.32", "min_intra_species_ani": "95.53", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_000764655.1", "gtdb_species": "s__Aeromonas aquatica", "ani": 86.5096, "matched_fragments": 1128, "total_fragments": 1670, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000764645.1", "gtdb_species": "s__Aeromonas finlandensis", "ani": 86.4131, "matched_fragments": 1013, "total_fragments": 1670, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000388115.1", "gtdb_species": "s__Aeromonas molluscorum", "ani": 84.0361, "matched_fragments": 930, "total_fragments": 1670, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.0, "cell_length": 0.301, "doubling_h": 0.912, "growth_tmp": 27.6, "optimum_tmp": 18.4, "optimum_ph": 7.25, "genome_size": 4833896.632, "gc_content": 57.448, "coding_genes": 4278.3, "rRNA16S_genes": 9.5, "tRNA_genes": 118.333, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.75, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Aeromonas", "salmonicida", "subsp.", "pectinolytica", "34mel" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }