{ "type": "genome", "identifier": "GCF_002741055.1", "organism": "Paenibacillus ihbetae", "title": "Paenibacillus ihbetae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-Institute of Himalayan Bioresource Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002741055.1", "bioproject": "PRJNA224116", "biosample": "SAMN05335590", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1870820", "species_taxid": "1870820", "organism_name": "Paenibacillus ihbetae", "infraspecific_name": "strain=IHBB 9852", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/05", "asm_name": "ASM274105v1", "asm_submitter": "CSIR-Institute of Himalayan Bioresource Technology", "gbrs_paired_asm": "GCA_002741055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/741/055/GCF_002741055.1_ASM274105v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6593819", "genome_size_ungapped": "6593819", "gc_percent": "52.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "5911", "protein_coding_gene_count": "5750", "non_coding_gene_count": "105", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-05", "dateModified": "2016-08-05", "datePublished": "2016-08-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus ihbetae" ], "sample_taxid": [ "1870820" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Surajtal Lake at Lahaul Valley, Himachal Pradesh" ], "sample_host_location_id": [], "data_size": "1.873 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 16.0, "max": 16.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6593819", "Number of Sequences": "1", "Longest Sequences (bp)": "6593819", "N50 (bp)": "6593819", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.1", "Number of CDSs": "5919", "Average Protein Length": "313.9", "Coding Ratio (%)": "84.5", "Number of rRNAs": "27", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus ihbetae", "strain": "strain=IHBB 9852", "accession": "GCA_002741055.1", 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"total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tepidiphilus", "strain": "strain=SYSU G01001", "accession": "GCA_008635795.1", "taxid": 2608683, "species_taxid": 2608683, "relation_to_type": "type", "validated": true, "ani": 77.1191, "matched_fragments": 240, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus darwinianus", "strain": "strain=Br", "accession": "GCA_000598065.1", "taxid": 1380763, "species_taxid": 1380763, "relation_to_type": "type", "validated": true, "ani": 77.0959, "matched_fragments": 107, "total_fragments": 2197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus piscarius", "strain": "strain=P121", "accession": "GCA_022234545.1", "taxid": 1089681, "species_taxid": 1089681, "relation_to_type": "type", "validated": true, "ani": 76.8822, "matched_fragments": 235, "total_fragments": 2197, "ani_threshold": 95, 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