{ "type": "genome", "identifier": "GCF_002741985.1", "organism": "Vibrio rotiferianus CAIM 577 = LMG 21460", "title": "Vibrio rotiferianus CAIM 577 = LMG 21460", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CIAD, A.C.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002741985.1", "bioproject": "PRJNA224116", "biosample": "SAMN07819046", "wgs_master": "APHW00000000.1", "refseq_category": "na", "taxid": "1224743", "species_taxid": "190895", "organism_name": "Vibrio rotiferianus CAIM 577 = LMG 21460", "infraspecific_name": "strain=CAIM 577", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/02", "asm_name": "ASM274198v1", "asm_submitter": "CIAD, A.C.", "gbrs_paired_asm": "GCA_002741985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/741/985/GCF_002741985.1_ASM274198v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5368584", "genome_size_ungapped": "5368584", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002741985.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "5032", "protein_coding_gene_count": "4579", "non_coding_gene_count": "164", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-02", "dateModified": "2017-11-02", "datePublished": "2017-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio rotiferianus CAIM 577 = LMG 21460" ], "sample_taxid": [ "1224743" ], "sample_host_organism": [ "Brachionus plicatilis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "1.532 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5368584", "Number of Sequences": "111", "Longest Sequences (bp)": "372221", "N50 (bp)": "188275", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.7", "Number of CDSs": "4896", "Average Protein Length": "307.3", "Coding Ratio (%)": "84.1", "Number of rRNAs": "12", "Number of tRNAs": "118", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio rotiferianus", "strain": "strain=CAIM 577", "accession": "GCA_002741985.1", "taxid": 190895, "species_taxid": 190895, "relation_to_type": "type", "validated": true, "ani": 100.0, 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691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 82.2435, "matched_fragments": 796, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.7723, "matched_fragments": 409, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.7212, "matched_fragments": 411, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, 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