{
    "type": "genome",
    "identifier": "GCF_002741995.1",
    "organism": "Microbacterium sediminis",
    "title": "Microbacterium sediminis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Third Institute of Oceanography,SOA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002741995.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03075694",
        "wgs_master": "JRNY00000000.1",
        "refseq_category": "na",
        "taxid": "904291",
        "species_taxid": "904291",
        "organism_name": "Microbacterium sediminis",
        "infraspecific_name": "strain=YLB-01",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/11/02",
        "asm_name": "ASM274199v1",
        "asm_submitter": "Third Institute of Oceanography,SOA",
        "gbrs_paired_asm": "GCA_002741995.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/741/995/GCF_002741995.1_ASM274199v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2760011",
        "genome_size_ungapped": "2759961",
        "gc_percent": "72.000000",
        "replicon_count": "0",
        "scaffold_count": "24",
        "contig_count": "24",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002741995.1-RS_2024_04_02",
        "annotation_date": "2024-04-02",
        "total_gene_count": "2653",
        "protein_coding_gene_count": "2580",
        "non_coding_gene_count": "51",
        "pubmed_id": "22328608"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-11-02",
    "dateModified": "2017-11-02",
    "datePublished": "2017-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Microbacterium sediminis"
        ],
        "sample_taxid": [
            "904291"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Indian Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "0.728 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2760011",
        "Number of Sequences": "24",
        "Longest Sequences (bp)": "655808",
        "N50 (bp)": "215745",
        "Gap Ratio (%)": "0.001812",
        "GCcontent (%)": "71.9",
        "Number of CDSs": "2615",
        "Average Protein Length": "324.4",
        "Coding Ratio (%)": "92.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Microbacterium sediminis",
                "strain": "strain=YLB-01",
                "accession": "GCA_002741995.1",
                "taxid": 904291,
                "species_taxid": 904291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 907,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Microbacterium sediminis",
                "strain": "strain=YLB-01",
                "accession": "GCA_001689915.1",
                "taxid": 904291,
                "species_taxid": 904291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 907,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Microbacterium sediminis",
                "strain": "strain=YLB-01",
                "accession": "GCA_004564075.1",
                "taxid": 904291,
                "species_taxid": 904291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9504,
                "matched_fragments": 908,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Microbacterium marinilacus",
                "strain": "strain=YM11-607",
                "accession": "GCA_019753765.1",
                "taxid": 415209,
                "species_taxid": 415209,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6791,
                "matched_fragments": 567,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium oryzae",
                "strain": "strain=MB-10",
                "accession": "GCA_009735645.1",
                "taxid": 743009,
                "species_taxid": 743009,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4467,
                "matched_fragments": 520,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium album",
                "strain": "strain=CGMCC 1.15794",
                "accession": "GCA_014643695.1",
                "taxid": 2053191,
                "species_taxid": 2053191,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3905,
                "matched_fragments": 515,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium stercoris",
                "strain": "strain=NEAU-LLB",
                "accession": "GCA_017592545.1",
                "taxid": 2820289,
                "species_taxid": 2820289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3318,
                "matched_fragments": 531,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium halophytorum",
                "strain": "strain=YJYP 303",
                "accession": "GCA_002970975.1",
                "taxid": 2067568,
                "species_taxid": 2067568,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9693,
                "matched_fragments": 511,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium excoecariae",
                "strain": "strain=CBS5P-1",
                "accession": "GCA_011326725.1",
                "taxid": 2715210,
                "species_taxid": 2715210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.859,
                "matched_fragments": 451,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium gallinarum",
                "strain": "strain=Sa1CUA4",
                "accession": "GCA_014837165.1",
                "taxid": 2762209,
                "species_taxid": 2762209,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2847,
                "matched_fragments": 470,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium hominis",
                "strain": "strain=LCDC 84-0209",
                "accession": "GCA_001553805.1",
                "taxid": 162426,
                "species_taxid": 162426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1142,
                "matched_fragments": 434,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium pseudoresistens",
                "strain": "strain=DSM 22185",
                "accession": "GCA_013409745.1",
                "taxid": 640634,
                "species_taxid": 640634,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.094,
                "matched_fragments": 419,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium commune",
                "strain": "strain=Re1",
                "accession": "GCA_014836945.1",
                "taxid": 2762219,
                "species_taxid": 2762219,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0688,
                "matched_fragments": 431,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium bovistercoris",
                "strain": "strain=NEAU-LLE",
                "accession": "GCA_003387575.1",
                "taxid": 2293570,
                "species_taxid": 2293570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0387,
                "matched_fragments": 450,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004564075.1",
                "gtdb_species": "s__Microbacterium sediminis",
                "ani": 99.9504,
                "matched_fragments": 908,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_015235415.1",
                "gtdb_species": "s__Microbacterium paludicola_A",
                "ani": 82.4542,
                "matched_fragments": 559,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001426925.1",
                "gtdb_species": "s__Microbacterium sp001426925",
                "ani": 82.428,
                "matched_fragments": 547,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016805985.1",
                "gtdb_species": "s__Microbacterium sp016805985",
                "ani": 82.0919,
                "matched_fragments": 568,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009735645.1",
                "gtdb_species": "s__Microbacterium oryzae",
                "ani": 81.469,
                "matched_fragments": 519,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017592545.1",
                "gtdb_species": "s__Microbacterium sp017592545",
                "ani": 81.3069,
                "matched_fragments": 534,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000422385.1",
                "gtdb_species": "s__Microbacterium indicum",
                "ani": 81.2377,
                "matched_fragments": 495,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002970975.1",
                "gtdb_species": "s__Microbacterium halophytorum",
                "ani": 80.9566,
                "matched_fragments": 512,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_011326725.1",
                "gtdb_species": "s__Microbacterium excoecariae",
                "ani": 80.868,
                "matched_fragments": 450,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.69",
                "min_intra_species_ani": "95.69",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_902506375.1",
                "gtdb_species": "s__Microbacterium sp902506375",
                "ani": 80.1679,
                "matched_fragments": 468,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013409745.1",
                "gtdb_species": "s__Microbacterium pseudoresistens",
                "ani": 80.1171,
                "matched_fragments": 417,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001898315.1",
                "gtdb_species": "s__Microbacterium sp001898315",
                "ani": 80.1105,
                "matched_fragments": 450,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_016907355.1",
                "gtdb_species": "s__Agromyces aurantiacus",
                "ani": 79.0184,
                "matched_fragments": 426,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.096,
        "cell_length": 0.74,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.0,
        "genome_size": 2757338.0,
        "gc_content": 69.764,
        "coding_genes": 3206.916,
        "rRNA16S_genes": 1.75,
        "tRNA_genes": 50.166,
        "gram_stain": 1.0,
        "sporulation": 0.111,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Microbacterium",
        "sediminis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}