{ "type": "genome", "identifier": "GCF_002742285.1", "organism": "Amylibacter kogurei", "title": "Amylibacter kogurei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002742285.1", "bioproject": "PRJNA224116", "biosample": "SAMN05567576", "wgs_master": "MDGM00000000.1", "refseq_category": "reference genome", "taxid": "1889778", "species_taxid": "1889778", "organism_name": "Amylibacter kogurei", "infraspecific_name": "strain=4G11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/02", "asm_name": "ASM274228v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_002742285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/742/285/GCF_002742285.1_ASM274228v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2982417", "genome_size_ungapped": "2982417", "gc_percent": "49.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002742285.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2899", "protein_coding_gene_count": "2844", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-02", "dateModified": "2017-11-02", "datePublished": "2017-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Amylibacter kogurei" ], "sample_taxid": [ "1889778" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Aburatsubo Inlet, Kanagawa Prefecture" ], "sample_host_location_id": [], "data_size": "0.837 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2982417", "Number of Sequences": "16", "Longest Sequences (bp)": "1316319", "N50 (bp)": "431038", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.8", "Number of CDSs": "2862", "Average Protein Length": "317.0", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amylibacter kogurei", "strain": "strain=4G11", "accession": "GCA_002742285.1", "taxid": 1889778, "species_taxid": 1889778, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 986, "total_fragments": 987, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amylibacter ulvae", "strain": "strain=KCTC 32465", "accession": "GCA_014652655.1", "taxid": 1651968, "species_taxid": 1651968, "relation_to_type": "type", "validated": true, "ani": 89.1234, "matched_fragments": 856, "total_fragments": 987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nereida ignava", "strain": "strain=CECT 5292", "accession": "GCA_001404155.1", "taxid": 282199, "species_taxid": 282199, "relation_to_type": "type", "validated": true, "ani": 76.9835, "matched_fragments": 50, "total_fragments": 987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter albidus", "strain": "strain=DSM 26922", "accession": "GCA_900107015.1", "taxid": 670155, "species_taxid": 670155, "relation_to_type": "type", "validated": true, "ani": 76.5701, "matched_fragments": 51, "total_fragments": 987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens niveibacter", "strain": "strain=MCCC 1A06712", "accession": "GCA_002150005.2", "taxid": 1930667, "species_taxid": 1930667, "relation_to_type": "type", "validated": true, "ani": 76.3311, "matched_fragments": 81, "total_fragments": 987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius albus", "strain": "strain=CECT 7450", "accession": "GCA_900172335.1", "taxid": 1247867, "species_taxid": 1247867, "relation_to_type": "type", "validated": true, "ani": 76.3059, "matched_fragments": 55, "total_fragments": 987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Profundibacter amoris", "strain": "strain=BAR1", "accession": "GCA_003544895.1", "taxid": 2171755, "species_taxid": 2171755, "relation_to_type": "type", "validated": true, "ani": 76.2652, "matched_fragments": 75, "total_fragments": 987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificibacter marinus", "strain": "strain=DSM 25228", "accession": "GCA_900109555.1", "taxid": 658057, "species_taxid": 658057, "relation_to_type": "type", "validated": true, "ani": 76.2108, "matched_fragments": 79, "total_fragments": 987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodobacter wandonensis", "strain": "strain=KCTC 23672", "accession": "GCA_001202035.1", "taxid": 1120568, "species_taxid": 1120568, "relation_to_type": "type", "validated": true, "ani": 76.0478, "matched_fragments": 65, "total_fragments": 987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter marinus", "strain": "strain=DSM 23422", "accession": "GCA_900116285.1", "taxid": 394264, "species_taxid": 394264, "relation_to_type": "type", "validated": true, "ani": 75.8493, "matched_fragments": 75, "total_fragments": 987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliishimia ponticola", "strain": "strain=MYP11", "accession": "GCA_004803475.1", "taxid": 2499833, 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