{ "type": "genome", "identifier": "GCF_002749615.1", "organism": "Caulobacter mirabilis", "title": "Caulobacter mirabilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Chicago", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002749615.1", "bioproject": "PRJNA224116", "biosample": "SAMN07822593", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "69666", "species_taxid": "69666", "organism_name": "Caulobacter mirabilis", "infraspecific_name": "strain=FWC 38", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/03", "asm_name": "ASM274961v1", "asm_submitter": "The University of Chicago", "gbrs_paired_asm": "GCA_002749615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/749/615/GCF_002749615.1_ASM274961v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4577265", "genome_size_ungapped": "4577265", "gc_percent": "69.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002749615.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4380", "protein_coding_gene_count": "4304", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-03", "dateModified": "2017-11-03", "datePublished": "2017-11-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Caulobacter mirabilis" ], "sample_taxid": [ "69666" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Nevada, Las Vegas" ], "sample_host_location_id": [], "data_size": "1.230 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4577265", "Number of Sequences": "1", "Longest Sequences (bp)": "4577265", "N50 (bp)": "4577265", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.3", "Number of CDSs": "4374", "Average Protein Length": "319.8", "Coding Ratio (%)": "91.7", "Number of rRNAs": "6", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Caulobacter mirabilis", "strain": "strain=FWC 38", "accession": "GCA_002749615.1", "taxid": 69666, "species_taxid": 69666, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1521, "total_fragments": 1525, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Caulobacter hibisci", "strain": "strain=KACC 18849", "accession": "GCA_016135805.1", "taxid": 2035993, "species_taxid": 2035993, "relation_to_type": "type", "validated": true, "ani": 80.7174, "matched_fragments": 766, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter soli", "strain": "strain=Ji-3-8", "accession": "GCA_011045195.1", "taxid": 2708539, "species_taxid": 2708539, "relation_to_type": "type", "validated": true, "ani": 80.5137, "matched_fragments": 759, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter segnis", "strain": "strain=TK0059", "accession": "GCA_003015125.1", "taxid": 88688, "species_taxid": 88688, "relation_to_type": "type", "validated": true, "ani": 80.4996, "matched_fragments": 699, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter segnis", "strain": "strain=ATCC 21756", "accession": "GCA_000092285.1", "taxid": 88688, "species_taxid": 88688, "relation_to_type": "type", "validated": true, "ani": 80.4868, "matched_fragments": 699, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter radicis", "strain": "strain=695", "accession": "GCA_003094615.1", "taxid": 2172650, "species_taxid": 2172650, "relation_to_type": "type", "validated": true, "ani": 80.4508, "matched_fragments": 806, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=KCTC 52515", "accession": "GCA_010977555.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 80.4401, "matched_fragments": 781, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter zeae", "strain": "strain=410", "accession": "GCA_002858925.1", "taxid": 2055137, "species_taxid": 2055137, "relation_to_type": "type", "validated": true, "ani": 80.4319, "matched_fragments": 784, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=CGMCC 1.15915", "accession": "GCA_014645055.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 80.4253, "matched_fragments": 766, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter vibrioides", "strain": "strain=DSM 9893", "accession": "GCA_002858865.1", "taxid": 155892, "species_taxid": 155892, "relation_to_type": "type", "validated": true, "ani": 80.1199, "matched_fragments": 665, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium hankyongense", "strain": "strain=HKS-05", "accession": "GCA_003254505.1", "taxid": 1813876, "species_taxid": 1813876, "relation_to_type": "type", "validated": true, "ani": 79.9945, "matched_fragments": 619, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium soli", "strain": "strain=LX32", "accession": "GCA_003254475.1", "taxid": 2170551, "species_taxid": 2170551, "relation_to_type": "type", "validated": true, "ani": 79.8625, "matched_fragments": 597, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium zucineum", "strain": "strain=HLK1", "accession": "GCA_000017265.1", "taxid": 284016, "species_taxid": 284016, "relation_to_type": "type", "validated": true, "ani": 79.6718, "matched_fragments": 668, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium kunshanense", "strain": "strain=BUT-10", "accession": "GCA_003254525.1", "taxid": 1445034, "species_taxid": 1445034, "relation_to_type": "type", "validated": true, "ani": 79.4263, "matched_fragments": 609, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 1763816, "species_taxid": 1763816, "relation_to_type": "type", "validated": true, "ani": 79.3438, "matched_fragments": 666, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium glaciei", "strain": "strain=20VBR1", "accession": "GCA_016772415.2", "taxid": 2803784, "species_taxid": 2803784, "relation_to_type": "type", "validated": true, "ani": 79.2544, "matched_fragments": 610, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 79.0844, "matched_fragments": 413, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium parvum", "strain": "strain=HYN0004", "accession": "GCA_003150835.1", "taxid": 2201350, "species_taxid": 2201350, "relation_to_type": "type", "validated": true, "ani": 78.747, "matched_fragments": 443, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 76.5636, "matched_fragments": 288, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002749615.1", "gtdb_species": "s__Caulobacter mirabilis", "ani": 100.0, "matched_fragments": 1521, "total_fragments": 1525, "gtdb_taxonomy": 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