{ "type": "genome", "identifier": "GCF_002749895.1", "organism": "Vibrio fujianensis", "title": "Vibrio fujianensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute for Communicable Disease Control and Prevention, China CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002749895.1", "bioproject": "PRJNA224116", "biosample": "SAMN06673307", "wgs_master": "NBUS00000000.1", "refseq_category": "reference genome", "taxid": "1974215", "species_taxid": "1974215", "organism_name": "Vibrio fujianensis", "infraspecific_name": "strain=FJ201301", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/03", "asm_name": "ASM274989v1", "asm_submitter": "National Institute for Communicable Disease Control and Prevention, China CDC", "gbrs_paired_asm": "GCA_002749895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/749/895/GCF_002749895.1_ASM274989v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3617632", "genome_size_ungapped": "3606739", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002749895.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3632", "protein_coding_gene_count": "3348", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-03", "dateModified": "2017-11-03", "datePublished": "2017-11-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio fujianensis" ], "sample_taxid": [ "1974215" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Fuzhou" ], "sample_host_location_id": [], "data_size": "1.029 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3617632", "Number of Sequences": "54", "Longest Sequences (bp)": "836466", "N50 (bp)": "378365", "Gap Ratio (%)": "0.301109", "GCcontent (%)": "43.4", "Number of CDSs": "3322", "Average Protein Length": "312.3", "Coding Ratio (%)": "86.0", "Number of rRNAs": "3", "Number of tRNAs": "71", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio fujianensis", "strain": "strain=FJ201301", "accession": "GCA_002749895.1", "taxid": 1974215, "species_taxid": 1974215, 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"strain": "strain=NCTC11435", "accession": "GCA_900460385.1", "taxid": 674, "species_taxid": 674, "relation_to_type": "type", "validated": true, "ani": 78.5788, "matched_fragments": 313, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mimicus", "strain": "strain=CAIM 602", "accession": "GCA_000338875.1", "taxid": 674, "species_taxid": 674, "relation_to_type": "type", "validated": true, "ani": 78.5215, "matched_fragments": 312, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tarriae", "strain": "strain=2521-89", "accession": "GCA_002216685.1", "taxid": 2014742, "species_taxid": 2014742, "relation_to_type": "type", "validated": true, "ani": 78.4181, "matched_fragments": 325, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 78.2724, "matched_fragments": 203, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marisflavi", "strain": "strain=CECT 7928", "accession": "GCA_921294215.1", "taxid": 1216040, "species_taxid": 1216040, "relation_to_type": "type", "validated": true, "ani": 78.2075, "matched_fragments": 159, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, "relation_to_type": "type", "validated": true, "ani": 77.9976, "matched_fragments": 222, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002749895.1", "gtdb_species": "s__Vibrio fujianensis", "ani": 99.9805, 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